RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ACTC1P68032 377 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 ACTA1P68133 377 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 RPL18Q07020 188 aaKnown RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 BCL2L15Q5TBC7 163 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 SNX29P2Q8IUI4 249 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 FDCSPQ8NFU4 85 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 ST8SIA1Q92185 356 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 LIN37Q96GY3 246 aaPredicted RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 ZNF350Q9GZX5 532 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 TUBA8Q9NY65 449 aaPredicted RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 ING1Q9UK53 422 aaPredicted RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 PROCRQ9UNN8 238 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 FKBP7Q9Y680 259 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 FAM230AA0A1W2PPH8 454 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 SLC1A7O00341 560 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 PRICKLE3O43900 615 aaPredicted RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 NTN1O95631 604 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 IRF2P14316 349 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 CD82P27701 267 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 HLCSP50747 726 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 ROR2Q01974 943 aaKnown RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 CDC20Q12834 499 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 MRPL28Q13084 256 aaKnown RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 OR2G6Q5TZ20 316 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 CDCP2Q5VXM1 449 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 SLC22A25Q6T423 547 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 LRRN1Q6UXK5 716 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 SLC35F2Q8IXU6 374 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 MAML2Q8IZL2 1156 aaPredicted RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 SMAP2Q8WU79 429 aaPredicted RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 CCDC120Q96HB5 630 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 MRGPRX4Q96LA9 322 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 VSTM2LQ96N03 204 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 SH3GL3Q99963 347 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 DDA1Q9BW61 102 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 RAB33BQ9H082 229 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 WDR76Q9H967 626 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 WDR54Q9H977 334 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 EXOSC1Q9Y3B2 195 aaKnown RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 LRRC42Q9Y546 428 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 ZNF462Q96JM2 2506 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 ZC3H12DA2A288 527 aaKnown RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 ZNHIT1O43257 154 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 PRODHO43272 600 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 OR7A10O76100 309 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 CT45A8P0DMV1 189 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 CT45A9P0DMV2 189 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 TMPRSS3P57727 454 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 CT45A2Q5DJT8 189 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 C22orf42Q6IC83 251 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 JMJD6Q6NYC1 403 aaPredicted RBP8.39□□□□□ -1.07
VPS39-205ENST00000562258 TMEM53Q6P2H8 277 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 OR13C3Q8NGS6 347 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 OR2V1Q8NHB1 315 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 NEIL3Q8TAT5 605 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 TM4SF19Q96DZ7 209 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 CHST11Q9NPF2 352 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 ASH2LQ9UBL3 628 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 ABCA1O95477 2261 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 DPPA5A6NC42 116 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 PRR19A6NJB7 356 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 C9orf172C9J069 976 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 ZNF878C9JN71 531 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 H0YAE9 185 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 H3BSA7 217 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 AHCYL1O43865 530 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 SLC2A10O95528 541 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 APOC1P02654 83 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 ERGP11308 486 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 TBXA2RP21731 343 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 OR3A3P47888 321 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 OR3A2P47893 321 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 VBP1P61758 197 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 NHLH1Q02575 133 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 DBPQ10586 325 aaPredicted RBP8.38□□□□□ -1.07
VPS39-205ENST00000562258 CDK5R2Q13319 367 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 PGBD2Q6P3X8 592 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 B3GNT6Q6ZMB0 384 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 LINGO2Q7L985 606 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 GPR155Q7Z3F1 870 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 FJX1Q86VR8 437 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 SLC39A7Q92504 469 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 ZNF681Q96N22 645 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 HMG20AQ9NP66 347 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 FBXL2Q9UKC9 423 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 SLC5A6Q9Y289 635 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 SNPHO15079 494 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 B4GALT1P15291 398 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 CLN3Q13286 438 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 IL18R1Q13478 541 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 NADK2Q4G0N4 442 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 BATF2Q8N1L9 274 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 POC5Q8NA72 575 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 SLC37A3Q8NCC5 494 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 NUBPLQ8TB37 319 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 HSD17B8Q92506 261 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 FCGR1BQ92637 280 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 COX4I2Q96KJ9 171 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 DCSTAMPQ9H295 470 aa8.38□□□□□ -1.07
VPS39-205ENST00000562258 DNAJB11Q9UBS4 358 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms