RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KDELR2P33947 212 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 FABP6P51161 128 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 TAS2R41P59536 307 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 CYBRD1Q53TN4 286 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 AGAP6Q5VW22 663 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 Q71RC1 249 aaPredicted RBP13.68□□□□□ -0.22
VPS39-203ENST00000561797 SPATA21Q7Z572 469 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 TREML1Q86YW5 311 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 TMEM123Q8N131 208 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 LRRC17Q8N6Y2 441 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 ZNF837Q96EG3 531 aaPredicted RBP13.68□□□□□ -0.22
VPS39-203ENST00000561797 BOD1Q96IK1 185 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 MPP4Q96JB8 637 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 DHRS9Q9BPW9 319 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 PRSS27Q9BQR3 290 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 FAM107BQ9H098 131 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 PCDHAC1Q9H158 963 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 FKRPQ9H9S5 495 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 MOKQ9UQ07 419 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 CR1P17927 2039 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 ZNF726A6NNF4 738 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 ATP6V1G2-DDX39BF2Z307 99 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 RPL36A-HNRNPH2H7BZ11 118 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 NDUFS7O75251 213 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 SEC14L2O76054 403 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 HIST1H2ABP04908 130 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 UMPSP11172 480 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 TTKP33981 857 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 SH3BGRP55822 239 aaPredicted RBP13.67□□□□□ -0.22
VPS39-203ENST00000561797 CAMK2DQ13557 499 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 ZNF74Q16587 644 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 C1QTNF12Q5T7M4 302 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 NHLRC1Q6VVB1 395 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 HIST3H2AQ7L7L0 130 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 ARPINQ7Z6K5 226 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 PXKQ7Z7A4 578 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 BIVMQ86UB2 503 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 DTX2Q86UW9 622 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 NKAIN4Q8IVV8 208 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 WDFY1Q8IWB7 410 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 SLC15A3Q8IY34 581 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 C20orf196Q8IYI0 205 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 FBXL14Q8N1E6 418 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 HIST1H2ACQ93077 130 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 NELFAQ9H3P2 528 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 EFCAB1Q9HAE3 211 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 OBP2BQ9NPH6 170 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 NANSQ9NR45 359 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 RIMS3Q9UJD0 308 aa13.67□□□□□ -0.22
VPS39-203ENST00000561797 GDF2Q9UK05 429 aaPredicted RBP13.67□□□□□ -0.22
VPS39-203ENST00000561797 ARPC4-TTLL3A0A0A6YYG9 625 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 IGHV1-18A0A0C4DH31 117 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 BIDP55957 195 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 LIPEQ05469 1076 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 PIN1Q13526 163 aaPredicted RBP13.66□□□□□ -0.22
VPS39-203ENST00000561797 MUC15Q8N387 334 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 ANKK1Q8NFD2 765 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 OR6N1Q8NGY5 312 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 MAGEE2Q8TD90 523 aaPredicted RBP13.66□□□□□ -0.22
VPS39-203ENST00000561797 TMEM255BQ8WV15 326 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 SLC38A2Q96QD8 506 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 KCNS3Q9BQ31 491 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 ZNF426Q9BUY5 554 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 B3GAT2Q9NPZ5 323 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 MEPEQ9NQ76 525 aaPredicted RBP13.66□□□□□ -0.22
VPS39-203ENST00000561797 CBLN4Q9NTU7 201 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 TAS2R5Q9NYW4 299 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 AP3M1Q9Y2T2 418 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 ARFGEF3Q5TH69 2177 aa13.66□□□□□ -0.22
VPS39-203ENST00000561797 ZNF469Q96JG9 3925 aaPredicted RBP13.66□□□□□ -0.22
VPS39-203ENST00000561797 ZNF99A8MXY4 864 aaPredicted RBP13.65□□□□□ -0.22
VPS39-203ENST00000561797 NME4O00746 187 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 GSTA4O15217 222 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 RNF13O43567 381 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 OR5F1O95221 314 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 IGHV4-39P01824 125 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 IFNGR1P15260 489 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 CAPZA2P47755 286 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 NUDT2P50583 147 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 SLC7A2P52569 658 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 GYS2P54840 703 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 UGT2B15P54855 530 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 SELENOWP63302 87 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 CLEC12BQ2HXU8 276 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 CLEC9AQ6UXN8 241 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 SLC35D2Q76EJ3 337 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 PFN4Q8NHR9 129 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 COX4I2Q96KJ9 171 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 LRR1Q96L50 414 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 HS6ST2Q96MM7 605 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 HOPXQ9BPY8 73 aaPredicted RBP13.65□□□□□ -0.22
VPS39-203ENST00000561797 CACNG6Q9BXT2 260 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 SLC19A3Q9BZV2 496 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 ZNF229Q9UJW7 825 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 C2CD3Q4AC94 2353 aa13.65□□□□□ -0.22
VPS39-203ENST00000561797 CHD3Q12873 2000 aaKnown RBP13.64□□□□□ -0.23
VPS39-203ENST00000561797 BLOC1S5-TXNDC5H3BN57 136 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 CXCR6O00574 342 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 MT-ND1P03886 318 aa13.64□□□□□ -0.23
VPS39-203ENST00000561797 ASAH2BP0C7U1 165 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms