RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CLDN17P56750 224 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 MS4A2Q01362 244 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 PUDPQ08623 228 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ST3GAL3Q11203 375 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 PMS2P3Q13401 168 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 C1DQ13901 141 aaKnown RBP8.25□□□□□ -1.09
LDLR-211ENST00000560173 MS4A18Q3C1V0 323 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 NHLRC1Q6VVB1 395 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 UBE2J2Q8N2K1 259 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 LRRC17Q8N6Y2 441 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ZNF433Q8N7K0 673 aaPredicted RBP8.25□□□□□ -1.09
LDLR-211ENST00000560173 POMGNT2Q8NAT1 580 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 OR5J2Q8NH18 312 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 DNAJC9Q8WXX5 260 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ZC3HAV1LQ96H79 300 aaKnown RBP8.25□□□□□ -1.09
LDLR-211ENST00000560173 POM121Q96HA1 1249 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 C7orf34Q96L11 122 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 NSMCE2Q96MF7 247 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 HS6ST2Q96MM7 605 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ZNF184Q99676 751 aaPredicted RBP8.25□□□□□ -1.09
LDLR-211ENST00000560173 USB1Q9BQ65 265 aaKnown RBP8.25□□□□□ -1.09
LDLR-211ENST00000560173 FNDC11Q9BVV2 318 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 CLEC4MQ9H2X3 399 aaPredicted RBP8.25□□□□□ -1.09
LDLR-211ENST00000560173 SLCO5A1Q9H2Y9 848 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 Q9H521 79 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 NANSQ9NR45 359 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 C20orf141Q9NUB4 165 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ASB6Q9NWX5 421 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ZNF226Q9NYT6 803 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 TAS2R16Q9NYV7 291 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 NDUFAF4Q9P032 175 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 RHCGQ9UBD6 479 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 ZNF229Q9UJW7 825 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 NOX1Q9Y5S8 564 aa8.25□□□□□ -1.09
LDLR-211ENST00000560173 OR6C65A6NJZ3 312 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 H0YJX3 145 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 AKAP8O43823 692 aaKnown RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 PIP5K1CO60331 668 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 OR7A10O76100 309 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 ASAH2BP0C7U1 165 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 HLA-DOBP13765 273 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 ATP6V1B2P21281 511 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 LOXP28300 417 aaPredicted RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 DNAJA1P31689 397 aaKnown RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 FOXG1P55316 489 aaPredicted RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 LSM11P83369 360 aaKnown RBP eCLIP8.24□□□□□ -1.09
LDLR-211ENST00000560173 VLDLRP98155 873 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 IL1RL1Q01638 556 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 POU3F1Q03052 451 aaPredicted RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 LGALS3BPQ08380 585 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 ZP4Q12836 540 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 FAPQ12884 760 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 FOXD4Q12950 439 aaPredicted RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 TRAM2Q15035 370 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 TAF11Q15544 211 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 TAB1Q15750 504 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 IQCCQ4KMZ1 466 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 NIPAL3Q6P499 406 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 SEZ6L2Q6UXD5 910 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 NANOGNBQ7Z5D8 188 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 PXKQ7Z7A4 578 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 CYP4Z1Q86W10 505 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 CDC20BQ86Y33 519 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 WFDC8Q8IUA0 241 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 UEVLDQ8IX04 471 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 TMEM123Q8N131 208 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 PIK3C3Q8NEB9 887 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 SGTBQ96EQ0 304 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 PYURFQ96I23 114 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 OR2M2Q96R28 347 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 POLDIP3Q9BY77 421 aaKnown RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 ANKRD19PQ9H560 264 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 NMNAT1Q9HAN9 279 aaPredicted RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 CCM2LQ9NUG4 571 aaPredicted RBP8.24□□□□□ -1.09
LDLR-211ENST00000560173 TAS2R5Q9NYW4 299 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 UPB1Q9UBR1 384 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 MED31Q9Y3C7 131 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 V9GYQ6 96 aa8.24□□□□□ -1.09
LDLR-211ENST00000560173 PLCE1Q9P212 2302 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 A0A1W2PPR1 153 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 HTR3EA5X5Y0 456 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 OR5H1A6NKK0 313 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 ZNF587BE7ETH6 402 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 H3BNX3 289 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 hCG_2039718K7EN88 272 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 KLF4O43474 513 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 SLC43A1O75387 559 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 UPK3AO75631 287 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 RAD51DO75771 328 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 OR6A2O95222 327 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 HIST1H2ABP04908 130 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 H1F0P07305 194 aaKnown RBP8.23□□□□□ -1.09
LDLR-211ENST00000560173 ADORA3P0DMS8 318 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 RHCEP18577 417 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 FUT1P19526 365 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 FASP25445 335 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 MPGP29372 298 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 TRIP10Q15642 601 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 STK11Q15831 433 aa8.23□□□□□ -1.09
LDLR-211ENST00000560173 GABRA6Q16445 453 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms