RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 MED8Q96G25 268 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 IFT74Q96LB3 600 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 PRRC1Q96M27 445 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 SLC29A1Q99808 456 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 ARHGDIGQ99819 225 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 RARRES2Q99969 163 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 P2RY13Q9BPV8 354 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 BPIFA3Q9BQP9 254 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 TMEM246Q9BRR3 403 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 PELOQ9BRX2 385 aaKnown RBP1.16□□□□□ -2.22
USP3-209ENST00000558925 POLR2J2Q9GZM3 115 aaKnown RBP1.16□□□□□ -2.22
USP3-209ENST00000558925 POLR2J3Q9H1A7 115 aaKnown RBP1.16□□□□□ -2.22
USP3-209ENST00000558925 OR51M1Q9H341 326 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 CWH43Q9H720 699 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 TMEM185BQ9H7F4 350 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 NIPAL2Q9H841 368 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 UGT1A10Q9HAW8 530 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 NEK6Q9HC98 313 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 FGF20Q9NP95 211 aaPredicted RBP1.16□□□□□ -2.22
USP3-209ENST00000558925 GLRX2Q9NS18 164 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 AIG1Q9NVV5 245 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 KCNIP1Q9NZI2 227 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 GCNT4Q9P109 453 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 CLCF1Q9UBD9 225 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 ZNF646O15015 1829 aaPredicted RBP1.16□□□□□ -2.22
USP3-209ENST00000558925 CNTNAP1P78357 1384 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 ARHGAP21Q5T5U3 1957 aa1.16□□□□□ -2.22
USP3-209ENST00000558925 CDHR2Q9BYE9 1310 aa1.15□□□□□ -2.22
USP3-209ENST00000558925 NCF1BA6NI72 391 aaPredicted RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 USP27XA6NNY8 438 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 NCF1CA8MVU1 366 aaPredicted RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 E7ENQ6 273 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 F6UB75 175 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 RAB29O14966 203 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 AGPAT2O15120 278 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CLOCKO15516 846 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CACNG3O60359 315 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 NPIPB7O75200 414 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CDH16O75309 829 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 WBP4O75554 376 aaKnown RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 CTAG2O75638 210 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 MMP23AO75900 390 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CLPXO76031 633 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 H6PDO95479 791 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 FTH1P02794 183 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CHTF8P0CG12 524 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 OR8G3PP0DMU2 310 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 TROVE2P10155 538 aaKnown RBP eCLIP1.15□□□□□ -2.23
USP3-209ENST00000558925 MCF2P10911 925 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 GZMAP12544 262 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SLC2A5P22732 501 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 TUBG1P23258 451 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 COX7A1P24310 79 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CCNCP24863 283 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CD1BP29016 333 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 RFC4P35249 363 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 RORAP35398 523 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 VHLP40337 213 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 KIR2DS4P43632 304 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CDKN1BP46527 198 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 YAP1P46937 504 aaKnown RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 NPBWR2P48146 333 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CCNHP51946 323 aaPredicted RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 CRISP1P54107 249 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 DLX1P56177 255 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 RIPPLY3P57055 190 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 TAS2R19P59542 299 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 GPX6P59796 221 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 ACTA2P62736 377 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 GNB2P62879 340 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 ACTG2P63267 376 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 ACTC1P68032 377 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 ACTA1P68133 377 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 IRF8Q02556 426 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SELENBP1Q13228 472 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 UNC119Q13432 240 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 KIAA0087Q14695 138 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 GNMTQ14749 295 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 GPNMBQ14956 572 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 PPP1R7Q15435 360 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 NSDHLQ15738 373 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 VPS26BQ4G0F5 336 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SPANXN2Q5MJ10 180 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 PPM1LQ5SGD2 360 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 RAET1LQ5VY80 246 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 OLFML2AQ68BL7 652 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 C11orf71Q6IPW1 123 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 LCN12Q6JVE5 192 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 PLA2G4DQ86XP0 818 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 ZNF584Q8IVC4 421 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 PNKDQ8N490 385 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 ZADH2Q8N4Q0 377 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 C14orf178Q8N769 122 aaPredicted RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 ZFP41Q8N8Y5 198 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 FNDC5Q8NAU1 212 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 HSD17B11Q8NBQ5 300 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 OR6C4Q8NGE1 309 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 OR51S1Q8NGJ8 323 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 OR9A1PQ8NGU1 263 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 OR2G2Q8NGZ5 317 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms