RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PRKCAP17252 672 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 EPHA8P29322 1005 aaPredicted RBP9.62□□□□□ -0.87
CUX1-217ENST00000558836 TAS2R43P59537 309 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 ACTA2P62736 377 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 ACTG2P63267 376 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 ASAH1Q13510 395 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 MELKQ14680 651 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 COL28A1Q2UY09 1125 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 PHF19Q5T6S3 580 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 SLC35D2Q76EJ3 337 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 THEM6Q8WUY1 208 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 ZFP3Q96NJ6 502 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 ABHD1Q96SE0 405 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 AMELYQ99218 206 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 ULBP3Q9BZM4 244 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 BRD7Q9NPI1 651 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 OCIAD1Q9NX40 245 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 MED11Q9P086 117 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 IGHV5-10-1A0A0J9YXX1 117 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 GP1BBP13224 206 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 HLA-DOBP13765 273 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 GGTLC2Q14390 218 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 INPP5JQ15735 1006 aaPredicted RBP9.62□□□□□ -0.87
CUX1-217ENST00000558836 LPAL2Q16609 132 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 HES5Q5TA89 166 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 SLC6A19Q695T7 634 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 RHBDD2Q6NTF9 364 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 ADGRG3Q86Y34 549 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 MS4A15Q8N5U1 240 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 YIPF7Q8N8F6 280 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 OR8K3Q8NH51 312 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 AHCTF1Q8WYP5 2266 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 GUCD1Q96NT3 240 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 NKX3-1Q99801 234 aaPredicted RBP9.62□□□□□ -0.87
CUX1-217ENST00000558836 GAREM1Q9H706 876 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 FKRPQ9H9S5 495 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 SUSD2Q9UGT4 822 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 NUFIP1Q9UHK0 495 aaKnown RBP9.62□□□□□ -0.87
CUX1-217ENST00000558836 NPFFR2Q9Y5X5 522 aa9.62□□□□□ -0.87
CUX1-217ENST00000558836 KNTC1P50748 2209 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 TMEM265A0A087WTH1 108 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 TMED7-TICAM2A0A0A6YYA0 188 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 PIN1P1O15428 100 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 OGG1O15527 345 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 EEF1E1O43324 174 aaKnown RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 DCAF7P61962 342 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 CEP78Q5JTW2 689 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 LIPNQ5VXI9 398 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 ARSKQ6UWY0 536 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 KRT74Q7RTS7 529 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 ANKRD37Q7Z713 158 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 SAP25Q8TEE9 199 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 RGP1Q92546 391 aaPredicted RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 GCDHQ92947 438 aaPredicted RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 RNF166Q96A37 237 aaPredicted RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 GFM1Q96RP9 751 aaKnown RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 GPX7Q96SL4 187 aaPredicted RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 PTDSS2Q9BVG9 487 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 TMED7Q9Y3B3 224 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 PCDHGB7Q9Y5F8 929 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 HRH3Q9Y5N1 445 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 FADS1O60427 444 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 DOK2O60496 412 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 FZD7O75084 574 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 ADRB1P08588 477 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 GALP22466 123 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 TALDO1P37837 337 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 PNLIPRP2P54317 469 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 CBFBQ13951 182 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 MEP1BQ16820 701 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 RPL22L1Q6P5R6 122 aaKnown RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 PRSS45Q7RTY3 260 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 SERPINA12Q8IW75 414 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 SYS1Q8N2H4 156 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 BMPERQ8N8U9 685 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 ZNF441Q8N8Z8 693 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 EXD3Q8N9H8 876 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 OR51A4Q8NGJ6 313 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 METTL21AQ8WXB1 218 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 PPP1R14AQ96A00 147 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 ARL5BQ96KC2 179 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 CCDC74BQ96LY2 380 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 SMOC1Q9H4F8 434 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 DDX28Q9NUL7 540 aaKnown RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 SEMA5BQ9P283 1151 aa9.61□□□□□ -0.87
CUX1-217ENST00000558836 MRM2Q9UI43 246 aaKnown RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 PRRC2CQ9Y520 2896 aaKnown RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 URB1O60287 2271 aaKnown RBP9.61□□□□□ -0.87
CUX1-217ENST00000558836 TRBV11-1A0A0K0K1C0 115 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 FAM240BA0A1B0GVZ2 78 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 TMEM221A6NGB7 291 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 LYRM1O43325 122 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 BGLAPP02818 100 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 CD3GP09693 182 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 EPXP11678 715 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 PGCP20142 388 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 FOXK1P85037 733 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 ACKR1Q16570 336 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 STPG1Q5TH74 334 aa9.6□□□□□ -0.87
CUX1-217ENST00000558836 PAPD4Q6PIY7 484 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms