RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 TMEM160Q9NX00 188 aa12.71□□□□□ -0.37
SHMT2-235ENST00000557740 FBXO9Q9UK97 447 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-235ENST00000557740 USP22Q9UPT9 525 aa12.71□□□□□ -0.37
SHMT2-235ENST00000557740 A0A087WUJ7 227 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 IGHV2OR16-5A0A0B4J2B6 119 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 LOC102725191A0A1B0GVB3 256 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 HPRP00739 348 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 BGLAPP02818 100 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 FAM157CP0CG43 387 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 GZMKP49863 264 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 PPOXP50336 477 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 PUDPQ08623 228 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 PMS2P3Q13401 168 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 TTMPQ5BVD1 217 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 SWT1Q5T5J6 900 aaKnown RBP12.7□□□□□ -0.38
SHMT2-235ENST00000557740 DHDDSQ86SQ9 333 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 MDP1Q86V88 176 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 MYPOPQ86VE0 399 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-235ENST00000557740 SNX32Q86XE0 403 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 C11orf65Q8NCR3 313 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 ZNF837Q96EG3 531 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-235ENST00000557740 SLC41A3Q96GZ6 507 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 ANKRD27Q96NW4 1050 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 CPPED1Q9BRF8 314 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-235ENST00000557740 REPIN1Q9BWE0 567 aaKnown RBP12.7□□□□□ -0.38
SHMT2-235ENST00000557740 RAB1BQ9H0U4 201 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 PLK3Q9H4B4 646 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 ZNF442Q9H7R0 627 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 LPAR3Q9UBY5 353 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 LEF1Q9UJU2 399 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-235ENST00000557740 NOX1Q9Y5S8 564 aa12.7□□□□□ -0.38
SHMT2-235ENST00000557740 LOC390937A0A1W2PQ73 354 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 VWC2LB2RUY7 222 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 hCG_2039718K7EN88 272 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 ANGPT2O15123 496 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 SERPINI2O75830 405 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 HLA-DOBP13765 273 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 APEHP13798 732 aaKnown RBP12.69□□□□□ -0.38
SHMT2-235ENST00000557740 NPR2P20594 1047 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 NR4A2P43354 598 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 CDH12P55289 794 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 HGFACQ04756 655 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 ADRM1Q16186 407 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 IQCCQ4KMZ1 466 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 C20orf196Q8IYI0 205 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 SMYD1Q8NB12 490 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 OR6N1Q8NGY5 312 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 TMEM43Q9BTV4 400 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 EMC6Q9BV81 110 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 ULBP2Q9BZM5 246 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 SHARPINQ9H0F6 387 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 DYNLRB1Q9NP97 96 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 INTS9Q9NV88 658 aaKnown RBP12.69□□□□□ -0.38
SHMT2-235ENST00000557740 MED29Q9NX70 200 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 MRPL39Q9NYK5 338 aaKnown RBP12.69□□□□□ -0.38
SHMT2-235ENST00000557740 KCNS2Q9ULS6 477 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 FBN1P35555 2871 aaKnown RBP12.69□□□□□ -0.38
SHMT2-235ENST00000557740 RTTNQ86VV8 2226 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 FBN3Q75N90 2809 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 MXRA5Q9NR99 2828 aa12.69□□□□□ -0.38
SHMT2-235ENST00000557740 SLC35F4A4IF30 521 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 ZNF503-AS2A6NEH8 195 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 ZNF726A6NNF4 738 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 MS4A18H0YCH9 400 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 M0R3H8 397 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 LMX1BO60663 402 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 FMO6PO60774 539 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 MFN2O95140 757 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 OPN1SWP03999 348 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 CD79AP11912 226 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 AHCYP23526 432 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 THBS4P35443 961 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 RBBP4Q09028 425 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 SNTB2Q13425 540 aaKnown RBP12.68□□□□□ -0.38
SHMT2-235ENST00000557740 DAG1Q14118 895 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 GSG1Q2KHT4 349 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 MS4A18Q3C1V0 323 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 RUNDC3AQ59EK9 446 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 FAM166AQ6J272 317 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 DLEU7Q6UYE1 221 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 ZNF813Q6ZN06 617 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 SPATA21Q7Z572 469 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 SVOPLQ8N434 492 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 ZNF540Q8NDQ6 660 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 IL17RDQ8NFM7 739 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 TMEM158Q8WZ71 300 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 THOC1Q96FV9 657 aaKnown RBP12.68□□□□□ -0.38
SHMT2-235ENST00000557740 LRR1Q96L50 414 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 FOXN4Q96NZ1 517 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 MOGAT1Q96PD6 335 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 CGREF1Q99674 301 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 MCHR1Q99705 422 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 NOX3Q9HBY0 568 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 TRIM33Q9UPN9 1127 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 POFUT2Q9Y2G5 429 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 NDUFAF1Q9Y375 327 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 ARFGEF3Q5TH69 2177 aa12.68□□□□□ -0.38
SHMT2-235ENST00000557740 LOC100289279A0A1B0GTE1 492 aa12.67□□□□□ -0.38
SHMT2-235ENST00000557740 PLPP3O14495 311 aa12.67□□□□□ -0.38
SHMT2-235ENST00000557740 TPST2O60704 377 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms