RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	OR7A17	O14581	309 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	DHH	O43323	396 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	FRS3	O43559	492 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	DNPH1	O43598	174 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	TRAF3IP2	O43734	574 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	EIF4E2	O60573	245 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	EIF1B	O60739	113 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ERLIN1	O75477	346 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	BANF1	O75531	89 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	URI1	O94763	535 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	H6PD	O95479	791 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	PMS2P2	O95744	297 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	NUDT14	O95848	222 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CHRM2	P08172	466 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	IL3	P08700	152 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CSF1	P09603	554 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	PPIAL4G	P0DN37	164 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CDH2	P19022	906 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	TCN1	P20061	433 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	TIA1	P31483	386 aa	Known RBP eCLIP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ELK3	P41970	407 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CRYBB2	P43320	205 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	RAD52	P43351	418 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	MAGEA8	P43361	318 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	GSTM5	P46439	218 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CLK1	P49759	484 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ANXA11	P50995	505 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	NCBP2	P52298	156 aa	Known RBP eCLIP	3.97	□□□□□ -1.77	6e-13	■■□□□ 13
SCFD1-223	ENST00000557076	UBE2N	P61088	152 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF117	Q03924	483 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	PAX8	Q06710	450 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	PIGF	Q07326	219 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF154	Q13106	437 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	DAG1	Q14118	895 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	SLC17A1	Q14916	467 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CD226	Q15762	336 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZKSCAN8	Q15776	578 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	PFKFB4	Q16877	469 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	TBRG1	Q3YBR2	411 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CD300E	Q496F6	205 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	HIKESHI	Q53FT3	197 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	SYT14P1	Q58G82	188 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	SGO1	Q5FBB7	561 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ARMCX4	Q5H9R4	360 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	OTUD3	Q5T2D3	398 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	C9orf135	Q5VTT2	229 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	C11orf87	Q6NUJ2	197 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	C3orf33	Q6P1S2	294 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	TTC27	Q6P3X3	843 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZCCHC12	Q6PEW1	402 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CBLN3	Q6UW01	205 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CCBE1	Q6UXH8	406 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	LRIG3	Q6UXM1	1119 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CYS1	Q717R9	158 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	GOLGA7	Q7Z5G4	137 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	WDFY1	Q8IWB7	410 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CCDC36	Q8IYA8	594 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ADGRG5	Q8IZF4	528 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	PDIK1L	Q8N165	341 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	C1orf52	Q8N6N3	182 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZIC4	Q8N9L1	334 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CDRT4	Q8N9R6	151 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	OR5W2	Q8NH69	310 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	LINC01006	Q8NI28	216 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	PIK3R3	Q92569	461 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	EXT2	Q93063	718 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	RAB24	Q969Q5	203 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ATP6V1E2	Q96A05	226 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	EXOSC8	Q96B26	276 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZHX1-C8orf76	Q96EF9	292 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	GPR22	Q99680	433 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	HOXD1	Q9GZZ0	328 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	GLIPR2	Q9H4G4	154 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	ELOVL6	Q9H5J4	265 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CAB39L	Q9H9S4	337 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	DDX18	Q9NVP1	670 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	NKIRAS2	Q9NYR9	191 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	GRHL1	Q9NZI5	618 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	PURG	Q9UJV8	347 aa	Known RBP	3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	SLC9A8	Q9Y2E8	581 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	CARD8	Q9Y2G2	431 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	HDGFL3	Q9Y3E1	203 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	FLVCR1	Q9Y5Y0	555 aa		3.97	□□□□□ -1.77
SCFD1-223	ENST00000557076	DOCK11	Q5JSL3	2073 aa		3.96	□□□□□ -1.77
SCFD1-223	ENST00000557076	IGHV2OR16-5	A0A0B4J2B6	119 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	AGAP5	A6NIR3	686 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	SRRM5	B3KS81	715 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	TRIM49D1	C9J1S8	452 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	C3orf84	H3BNL1	204 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	CCDC188	H7C350	402 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	GTPBP1	O00178	669 aa	Known RBP	3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	FOXH1	O75593	365 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	PPP1R3D	O95685	299 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	PDYN	P01213	254 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	IGKV2-30	P06310	120 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	PRPS2	P11908	318 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	HSD3B1	P14060	373 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	GFAP	P14136	432 aa		3.96	□□□□□ -1.78
SCFD1-223	ENST00000557076	CRABP2	P29373	138 aa		3.96	□□□□□ -1.78

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