RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ALG2Q9H553 416 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 BARX1Q9HBU1 254 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 GPR35Q9HC97 309 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 CBLN4Q9NTU7 201 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 ARMCX1Q9P291 453 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 ZNF229Q9UJW7 825 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 SLC7A7Q9UM01 511 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 HTR3EA5X5Y0 456 aa14□□□□□ -0.17
CCDC88C-209ENST00000554872 ZNF99A8MXY4 864 aaPredicted RBP14□□□□□ -0.17
CCDC88C-209ENST00000554872 ASAH2BP0C7U1 165 aa14□□□□□ -0.17
CCDC88C-209ENST00000554872 KDELR2P33947 212 aa14□□□□□ -0.17
CCDC88C-209ENST00000554872 UBE2NP61088 152 aaKnown RBP14□□□□□ -0.17
CCDC88C-209ENST00000554872 POU3F1Q03052 451 aaPredicted RBP14□□□□□ -0.17
CCDC88C-209ENST00000554872 MICU2Q8IYU8 434 aa14□□□□□ -0.17
CCDC88C-209ENST00000554872 LIPHQ8WWY8 451 aa14□□□□□ -0.17
CCDC88C-209ENST00000554872 RCN3Q96D15 328 aa14□□□□□ -0.17
CCDC88C-209ENST00000554872 ADAD1Q96M93 576 aaKnown RBP14□□□□□ -0.17
CCDC88C-209ENST00000554872 SLC38A2Q96QD8 506 aa14□□□□□ -0.17
CCDC88C-209ENST00000554872 HOPXQ9BPY8 73 aaPredicted RBP14□□□□□ -0.17
CCDC88C-209ENST00000554872 CRLF2Q9HC73 371 aa14□□□□□ -0.17
CCDC88C-209ENST00000554872 IGHV1-18A0A0C4DH31 117 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 ELOVL7A1L3X0 281 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 H7C417 338 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 NDUFAB1O14561 156 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 HEXAP06865 529 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 COX4I1P13073 169 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 HLA-DOBP13765 273 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 CBLP22681 906 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 CYBRD1Q53TN4 286 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 SLC46A3Q7Z3Q1 461 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 SLC15A3Q8IY34 581 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 FBXL14Q8N1E6 418 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 MUC15Q8N387 334 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 B3GAT2Q9NPZ5 323 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 MEPEQ9NQ76 525 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 NANSQ9NR45 359 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 CMTM6Q9NX76 183 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 POU2F3Q9UKI9 436 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 USP22Q9UPT9 525 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 SH3GLB1Q9Y371 365 aa13.99□□□□□ -0.17
CCDC88C-209ENST00000554872 SLC35F4A4IF30 521 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 LRRN3E7EW58 273 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 H7C1Q1 480 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 PDE5AO76074 875 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 MT-ND1P03886 318 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 TSPAN19P0C672 248 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 CBR1P16152 277 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 CDH2P19022 906 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 SELENOWP63302 87 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 ARF1P84077 181 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 CEACAM16Q2WEN9 425 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 SPATA21Q7Z572 469 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 CIARTQ8N365 385 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 C10orf53Q8N6V4 93 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 POU5F2Q8N7G0 328 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 OR6X1Q8NH79 312 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 HS6ST2Q96MM7 605 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 MYLK2Q9H1R3 596 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 GSX1Q9H4S2 264 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 DENND2DQ9H6A0 471 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 EFCAB1Q9HAE3 211 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 TAS2R5Q9NYW4 299 aa13.98□□□□□ -0.17
CCDC88C-209ENST00000554872 NAV3Q8IVL0 2385 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 TRIM64A6NGJ6 449 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 TRIM64BA6NI03 449 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 NPIPB13A6NJU9 1138 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 CENPBD1B2RD01 187 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 NPIPB4C9JG80 1138 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 ATP6V1G2-DDX39BF2Z307 99 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 CH25HO95992 272 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 IGHV4-39P01824 125 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 CRYAAP02489 173 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 ADORA3P0DMS8 318 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 PRDX6P30041 224 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 APOBEC3AP31941 199 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 ARR3P36575 388 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 CDKN1AP38936 164 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 TAS2R41P59536 307 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 IL1RL1Q01638 556 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 SF3A3Q12874 501 aaKnown RBP eCLIP13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 CLEC12BQ2HXU8 276 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 LZICQ8WZA0 190 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 CMTM5Q96DZ9 223 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 ZNF837Q96EG3 531 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 TXNDC15Q96J42 360 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 PRRC1Q96M27 445 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 SEPHS2Q99611 448 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 C1QTNF6Q9BXI9 259 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 MED29Q9NX70 200 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 ABCD2Q9UBJ2 740 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 RIMS3Q9UJD0 308 aa13.97□□□□□ -0.17
CCDC88C-209ENST00000554872 A0A096LPE4 126 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 A0A1W2PPZ6 126 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 ZNF726A6NNF4 738 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 NME4O00746 187 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 ENTPD5O75356 428 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 OR6A2O95222 327 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 CECR9P0C854 216 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 BMP4P12644 408 aa13.96□□□□□ -0.17
CCDC88C-209ENST00000554872 IFNGR1P15260 489 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms