RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 MGAT4BQ9UQ53 548 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 RNF115Q9Y4L5 304 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 ADGRG4Q8IZF6 3080 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 ARPC4-TTLL3A0A0A6YYG9 625 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 MCIDASD6RGH6 385 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 KLF4O43474 513 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 PRSS23O95084 383 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 FABP3P05413 133 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 SAGP10523 405 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 IFI30P13284 250 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 PTAFRP25105 342 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 PRPS1P60891 318 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 UBE2NP61088 152 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 ROR2Q01974 943 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 TSC22D1Q15714 1073 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 NCMAPQ5T1S8 102 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 LCN8Q6JVE9 175 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 ANKRD16Q6P6B7 361 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 ZNF704Q6ZNC4 412 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 MBOAT2Q6ZWT7 520 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 SLC35D2Q76EJ3 337 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 C20orf196Q8IYI0 205 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 KDM8Q8N371 416 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 FAM156AQ8NDB6 213 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 OR1K1Q8NGR3 316 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 MBD6Q96DN6 1003 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 ASB9Q96DX5 294 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 PLPPR2Q96GM1 343 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 ZNF347Q96SE7 839 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 TMEM204Q9BSN7 226 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 MAGIXQ9H6Y5 334 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 NMNAT1Q9HAN9 279 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 SLC17A5Q9NRA2 495 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 MAN2C1Q9NTJ4 1040 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 HIF3AQ9Y2N7 669 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 FREM1Q5H8C1 2179 aa12.64□□□□□ -0.39
CCDC88C-207ENST00000554051 ZNF99A8MXY4 864 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 LRRN3E7EW58 273 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 C11orf98E9PRG8 122 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 SIAH2O43255 324 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 BCL10O95999 233 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 HPRP00739 348 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 IGHG1P01857 330 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 FUT1P19526 365 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 CSNK1A1P48729 337 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 RASSF2P50749 326 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 RPS4XP62701 263 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 PRKCDQ05655 676 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 RPL18Q07020 188 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 KEAP1Q14145 624 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 TRIM25Q14258 630 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 ADAM5Q6NVV9 412 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 SEZ6L2Q6UXD5 910 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 NRMQ8IXM6 262 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 OR6N1Q8NGY5 312 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 FNDC8Q8TC99 324 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 NANOS1Q8WY41 292 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 PIGTQ969N2 578 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 ZNF566Q969W8 418 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 SLC25A44Q96H78 314 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 C7orf34Q96L11 122 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 DHRS1Q96LJ7 313 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 ULBP2Q9BZM5 246 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 GPR35Q9HC97 309 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 INIPQ9NRY2 104 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 TAS2R5Q9NYW4 299 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 NDUFAF4Q9P032 175 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 SLC25A15Q9Y619 301 aa12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 ANKRD17O75179 2603 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-207ENST00000554051 SLC35F4A4IF30 521 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 EFCAB9A8MZ26 197 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 BLOC1S5-TXNDC5H3BN57 136 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 FFAR1O14842 300 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 CLOCKO15516 846 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 UPK3AO75631 287 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 SEMG1P04279 462 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 TSPAN19P0C672 248 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 IFNGR1P15260 489 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 LOXP28300 417 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 IFNGR2P38484 337 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 YAP1P46937 504 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 BIDP55957 195 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 GK3PQ14409 553 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 C3orf36Q3SXR2 165 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 TBRG1Q3YBR2 411 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 NRN1LQ496H8 165 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 FGD3Q5JSP0 725 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 C22orf34Q6ZV56 151 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 DHFR2Q86XF0 187 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 DEPDC4Q8N2C3 294 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 FAM169BQ8N8A8 192 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 OR52N5Q8NH56 324 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 LRGUKQ96M69 825 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 ALPK1Q96QP1 1244 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 FOXC2Q99958 501 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 CRLF2Q9HC73 371 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 IL1RAPQ9NPH3 570 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 C20orf141Q9NUB4 165 aa12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 BEX4Q9NWD9 120 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-207ENST00000554051 MED29Q9NX70 200 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms