RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 MED29Q9NX70 200 aa10.86□□□□□ -0.67
SHMT2-209ENST00000553949 STX18Q9P2W9 335 aaKnown RBP10.86□□□□□ -0.67
SHMT2-209ENST00000553949 IL20RAQ9UHF4 553 aa10.86□□□□□ -0.67
SHMT2-209ENST00000553949 RRP15Q9Y3B9 282 aaKnown RBP10.86□□□□□ -0.67
SHMT2-209ENST00000553949 CDH10Q9Y6N8 788 aa10.86□□□□□ -0.67
SHMT2-209ENST00000553949 MPDZO75970 2070 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 MCIDASD6RGH6 385 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 MGRN1O60291 552 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 ZG16O60844 167 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 MRPL33O75394 65 aaKnown RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 SOX14O95416 240 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 CGAP01215 116 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 IGHMP01871 453 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 TP53P04637 393 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 CD14P08571 375 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 IGFBP1P08833 259 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 SLC6A6P31641 620 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 DAP3P51398 398 aaKnown RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 CTXN1P60606 82 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 ERVK-25P63136 954 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 PPP2R2BQ00005 443 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 ACKR1Q16570 336 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 CASP12Q6UXS9 341 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 DPY19L2P2Q6ZN68 376 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 MRGPRGQ86SM5 289 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 CBR4Q8N4T8 237 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 ASB5Q8WWX0 329 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 EME1Q96AY2 570 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 APH1AQ96BI3 265 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 SAMD8Q96LT4 415 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 RBM4BQ9BQ04 359 aaKnown RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 C9orf16Q9BUW7 83 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 KATNB1Q9BVA0 655 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 RBM4Q9BWF3 364 aaKnown RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 OSBPL10Q9BXB5 764 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 POLDIP3Q9BY77 421 aaKnown RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 TXNIPQ9H3M7 391 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 PIGMQ9H3S5 423 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 PLSCR4Q9NRQ2 329 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 PARPBPQ9NWS1 579 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 IL20Q9NYY1 176 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 REV1Q9UBZ9 1251 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 NKX1-2Q9UD57 310 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-209ENST00000553949 PROCRQ9UNN8 238 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 RCE1Q9Y256 329 aa10.85□□□□□ -0.67
SHMT2-209ENST00000553949 SLC35F4A4IF30 521 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 NPIPB13A6NJU9 1138 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 ZNF726A6NNF4 738 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 NPIPB4C9JG80 1138 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 EI24O14681 340 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 AKAP8O43823 692 aaKnown RBP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 SMNDC1O75940 238 aaKnown RBP eCLIP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 ZNF432O94892 652 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 AGFG2O95081 481 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 BCL10O95999 233 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 CD8BP10966 210 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 OSMP13725 252 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 AGAP20933 346 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 IGFBP5P24593 272 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 EDNRAP25101 427 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 OR3A2P47893 321 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 SELENOPP49908 381 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 BIDP55957 195 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 SRSF1Q07955 248 aaKnown RBP eCLIP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 TOP3AQ13472 1001 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 DAG1Q14118 895 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 MELKQ14680 651 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 TRIP10Q15642 601 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 SLC36A3Q495N2 470 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 CLEC12AQ5QGZ9 265 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 ARMC4Q5T2S8 1044 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 KDM4DQ6B0I6 523 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 NIPAL3Q6P499 406 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 XKRXQ6PP77 449 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 TFAP2EQ6VUC0 442 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 WDFY1Q8IWB7 410 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 ZNF100Q8IYN0 542 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 PARP8Q8N3A8 854 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 ZNF808Q8N4W9 903 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 RELL2Q8NC24 303 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 OR52L1Q8NGH7 329 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 OR8D4Q8NGM9 314 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 OR6X1Q8NH79 312 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 LILRB4Q8NHJ6 448 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 CA5BP1Q8WTZ4 195 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 ITLN2Q8WWU7 325 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 ASB10Q8WXI3 467 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 ADAD1Q96M93 576 aaKnown RBP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 TSPAN32Q96QS1 320 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 OR2M2Q96R28 347 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 EMC6Q9BV81 110 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 IFT27Q9BW83 186 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 PLA2G12AQ9BZM1 189 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 OPN3Q9H1Y3 402 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-209ENST00000553949 RNPEPL1Q9HAU8 725 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 NRIP3Q9NQ35 241 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 KRT84Q9NSB2 600 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 TBC1D23Q9NUY8 699 aa10.84□□□□□ -0.67
SHMT2-209ENST00000553949 USE1Q9NZ43 259 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms