RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 MED29Q9NX70 200 aa16.85■□□□□ 0.29
PTCH1-227ENST00000553256 ARL2BPQ9Y2Y0 163 aa16.85■□□□□ 0.29
PTCH1-227ENST00000553256 AMDHD2Q9Y303 409 aa16.85■□□□□ 0.29
PTCH1-227ENST00000553256 SLC35F4A4IF30 521 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 ZNF503-AS2A6NEH8 195 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 ABCD4O14678 606 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 CLOCKO15516 846 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 MT-ND1P03886 318 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 PTAFRP25105 342 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 ROR2Q01974 943 aaKnown RBP16.84■□□□□ 0.29
PTCH1-227ENST00000553256 POU3F1Q03052 451 aaPredicted RBP16.84■□□□□ 0.29
PTCH1-227ENST00000553256 IQCCQ4KMZ1 466 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 B3GLCTQ6Y288 498 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 DEF8Q6ZN54 512 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 DTX2Q86UW9 622 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 PRRC1Q96M27 445 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 EMC6Q9BV81 110 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 GRIP2Q9C0E4 1043 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 OBP2BQ9NPH6 170 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 ARL8BQ9NVJ2 186 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 CD300AQ9UGN4 299 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 NF1P21359 2839 aa16.84■□□□□ 0.29
PTCH1-227ENST00000553256 E7EQL1 145 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 SLC43A1O75387 559 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 IGLV1-44P01699 117 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 ZNF83P51522 516 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 NKX6-1P78426 367 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-227ENST00000553256 FHL1Q13642 323 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 C1DQ13901 141 aaKnown RBP16.83■□□□□ 0.28
PTCH1-227ENST00000553256 PRSS57Q6UWY2 283 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 TMEM108Q6UXF1 575 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 ABHD12BQ7Z5M8 362 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-227ENST00000553256 FAM169BQ8N8A8 192 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 TMEM239Q8WW34 195 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 SEPHS2Q99611 448 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 NANSQ9NR45 359 aa16.83■□□□□ 0.28
PTCH1-227ENST00000553256 SETD2Q9BYW2 2564 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-227ENST00000553256 J3KTA2 159 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 KPNA4O00629 521 aaPredicted RBP16.82■□□□□ 0.28
PTCH1-227ENST00000553256 NDUFAB1O14561 156 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 SMPD2O60906 423 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 HOXB1P14653 301 aaPredicted RBP16.82■□□□□ 0.28
PTCH1-227ENST00000553256 NQO1P15559 274 aaKnown RBP16.82■□□□□ 0.28
PTCH1-227ENST00000553256 PTH2RP49190 550 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 SH3BGRP55822 239 aaPredicted RBP16.82■□□□□ 0.28
PTCH1-227ENST00000553256 TAS2R41P59536 307 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 PRPS1P60891 318 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 ARF1P84077 181 aaKnown RBP16.82■□□□□ 0.28
PTCH1-227ENST00000553256 CEACAM16Q2WEN9 425 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 SHEQ5VZ18 495 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 ANKRD16Q6P6B7 361 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 OFCC1Q8IZS5 231 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 RBM15BQ8NDT2 890 aaKnown RBP16.82■□□□□ 0.28
PTCH1-227ENST00000553256 PIK3C3Q8NEB9 887 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 SMAP2Q8WU79 429 aaPredicted RBP16.82■□□□□ 0.28
PTCH1-227ENST00000553256 TMEM54Q969K7 222 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 FBXW5Q969U6 566 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 TPD52L3Q96J77 140 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 RADILQ96JH8 1075 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 ZNF75AQ96N20 296 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 C1QTNF6Q9BXI9 259 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 CRLF2Q9HC73 371 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 SPAG4Q9NPE6 437 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 MAGED1Q9Y5V3 778 aaPredicted RBP16.82■□□□□ 0.28
PTCH1-227ENST00000553256 ZANQ9Y493 2812 aa16.82■□□□□ 0.28
PTCH1-227ENST00000553256 IGHV1-18A0A0C4DH31 117 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 OR7A10O76100 309 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 SERPINA1P01009 418 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 IGKV3-15P01624 115 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 ADORA3P0DMS8 318 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 IFNGR1P15260 489 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 NCK1P16333 377 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 HIST3H3Q16695 136 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 C3orf36Q3SXR2 165 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 C11orf71Q6IPW1 123 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 FITM2Q8N6M3 262 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 OR6X1Q8NH79 312 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 HSH2DQ96JZ2 352 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 C7orf34Q96L11 122 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 HS6ST2Q96MM7 605 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 CCT8L2Q96SF2 557 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 KCTD14Q9BQ13 255 aaPredicted RBP16.81■□□□□ 0.28
PTCH1-227ENST00000553256 TRAF4Q9BUZ4 470 aaPredicted RBP16.81■□□□□ 0.28
PTCH1-227ENST00000553256 B3GNT2Q9NY97 397 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 CISD1Q9NZ45 108 aaKnown RBP16.81■□□□□ 0.28
PTCH1-227ENST00000553256 ZNF224Q9NZL3 707 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 MGAT4BQ9UQ53 548 aa16.81■□□□□ 0.28
PTCH1-227ENST00000553256 ANK3Q12955 4377 aaKnown RBP16.8■□□□□ 0.28
PTCH1-227ENST00000553256 ZNF99A8MXY4 864 aaPredicted RBP16.8■□□□□ 0.28
PTCH1-227ENST00000553256 AKAP8O43823 692 aaKnown RBP16.8■□□□□ 0.28
PTCH1-227ENST00000553256 PIP5K1CO60331 668 aa16.8■□□□□ 0.28
PTCH1-227ENST00000553256 SEMG1P04279 462 aa16.8■□□□□ 0.28
PTCH1-227ENST00000553256 HSD17B1P14061 328 aa16.8■□□□□ 0.28
PTCH1-227ENST00000553256 CD99P14209 185 aa16.8■□□□□ 0.28
PTCH1-227ENST00000553256 CDH2P19022 906 aaPredicted RBP16.8■□□□□ 0.28
PTCH1-227ENST00000553256 FUT1P19526 365 aa16.8■□□□□ 0.28
PTCH1-227ENST00000553256 RPS4XP62701 263 aaKnown RBP16.8■□□□□ 0.28
PTCH1-227ENST00000553256 RPL18Q07020 188 aaKnown RBP16.8■□□□□ 0.28
PTCH1-227ENST00000553256 HMBOX1Q6NT76 420 aa16.8■□□□□ 0.28
PTCH1-227ENST00000553256 LRFN4Q6PJG9 635 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms