RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 POMZP3Q6PJE2 187 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 NHLRC1Q6VVB1 395 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 LRRC69Q6ZNQ3 347 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 FGD2Q7Z6J4 655 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 LSM14AQ8ND56 463 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 RPS4Y2Q8TD47 263 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 GPBAR1Q8TDU6 330 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 PMM1Q92871 262 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 ADAD1Q96M93 576 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 AMELYQ99218 206 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 RTN4RQ9BZR6 473 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 OR10A5Q9H207 317 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 WDR76Q9H967 626 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 NOX3Q9HBY0 568 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 Q9N2J8 555 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 PRTFDC1Q9NRG1 225 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 RXFP3Q9NSD7 469 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 MRPL39Q9NYK5 338 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 KLHL9Q9P2J3 617 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 SCP2D1Q9UJQ7 156 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 UNC13CQ8NB66 2214 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 FER1L5A0AVI2 2057 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 PHF3Q92576 2039 aaKnown RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TCRBV21S2A2A0A5A6 115 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ELOA3DA6NLF2 546 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 B4DGG1 531 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 GABARAPH6UMI1 98 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TNFRSF10CO14798 259 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ARPC3O15145 178 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 GPRIN2O60269 458 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 RGS11O94810 467 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TNFP01375 233 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 IFNA16P05015 189 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ALDOBP05062 364 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MAOBP27338 520 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ADH7P40394 386 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 CAPZA2P47755 286 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 CTXN1P60606 82 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 OC90Q02509 493 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 HSF2Q03933 536 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 EIF2B5Q13144 721 aaKnown RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 GRK1Q15835 563 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 COL28A1Q2UY09 1125 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ELOA3BQ3SY89 546 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TCTE1Q5JU00 501 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 GPR139Q6DWJ6 353 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MED25Q71SY5 747 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 CHMP1BQ7LBR1 199 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 FAM122BQ7Z309 247 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TMPRSS12Q86WS5 348 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MCATQ8IVS2 390 aaKnown RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 GLB1L2Q8IW92 636 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 SLC35F3Q8IY50 421 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 PRR22Q8IZ63 422 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 SIX5Q8N196 739 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 SDR16C5Q8N3Y7 309 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 EXD3Q8N9H8 876 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ZSCAN1Q8NBB4 408 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ELOA3Q8NG57 546 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 PHOSPHO1Q8TCT1 267 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 FCAMRQ8WWV6 532 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ASB12Q8WXK4 309 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ATOH1Q92858 354 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 DGAT2Q96PD7 388 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 C7orf50Q9BRJ6 194 aaKnown RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 PIPOXQ9P0Z9 390 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MGAT4CQ9UBM8 478 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF69Q9UC07 566 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 NPTNQ9Y639 398 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 FKBP7Q9Y680 259 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 CPAMD8Q8IZJ3 1885 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 A0A1B0GVI7 797 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ANKRD20A5PA0PJZ0 165 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 A8MUA0 341 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 PRAMEF2O60811 474 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 PDGFAP04085 211 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 CLPSP04118 112 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 IGHV4-34P06331 123 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 FBXO45P0C2W1 286 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 CXCL2P19875 107 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 POU3F2P20265 443 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ITPKBP27987 946 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 EFNB2P52799 333 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 RAG2P55895 527 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MAZP56270 477 aaKnown RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TAS2R20P59543 309 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 TSPAN5P62079 268 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 HYAL1Q12794 435 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 CSRP2Q16527 193 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF74Q16587 644 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 ALG10Q5BKT4 473 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MESTQ5EB52 335 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 SLC35D3Q5M8T2 416 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MANEAQ5SRI9 462 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 YOD1Q5VVQ6 348 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-213ENST00000552720 C1QL3Q5VWW1 255 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 OR5M10Q6IEU7 315 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 BAIAP2L2Q6UXY1 529 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 MAMSTRQ6ZN01 415 aa6.82□□□□□ -1.32
LIMA1-213ENST00000552720 DPY19L4Q7Z388 723 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms