RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 VPS13CQ709C8 3753 aa10.41□□□□□ -0.74
YBX3-217ENST00000546164 KPNA4O00629 521 aaPredicted RBP10.4□□□□□ -0.74
YBX3-217ENST00000546164 PRSS23O95084 383 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 ZNF682O95780 498 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 SERPINA1P01009 418 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 TSPAN19P0C672 248 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 ADORA3P0DMS8 318 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 PTAFRP25105 342 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 MNAT1P51948 309 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 PRPS1P60891 318 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 SLC25A3Q00325 362 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 ROR2Q01974 943 aaKnown RBP10.4□□□□□ -0.74
YBX3-217ENST00000546164 LGALS3BPQ08380 585 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 TBRG1Q3YBR2 411 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 SAMD4BQ5PRF9 694 aaKnown RBP10.4□□□□□ -0.74
YBX3-217ENST00000546164 C9orf135Q5VTT2 229 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 GLYATQ6IB77 296 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 HMBOX1Q6NT76 420 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 KLHL17Q6TDP4 642 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 TMEM108Q6UXF1 575 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 C20orf196Q8IYI0 205 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 LRRC75A-AS1Q8N1F1 130 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 FITM2Q8N6M3 262 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 OR1K1Q8NGR3 316 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 LILRB1Q8NHL6 650 aaPredicted RBP10.4□□□□□ -0.74
YBX3-217ENST00000546164 AKAP1Q92667 903 aaKnown RBP eCLIP10.4□□□□□ -0.74
YBX3-217ENST00000546164 BCL2L2Q92843 193 aaPredicted RBP10.4□□□□□ -0.74
YBX3-217ENST00000546164 FAM162AQ96A26 154 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 HSH2DQ96JZ2 352 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 ADAD1Q96M93 576 aaKnown RBP10.4□□□□□ -0.74
YBX3-217ENST00000546164 GORASP2Q9H8Y8 452 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 MAN2C1Q9NTJ4 1040 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 TAS2R5Q9NYW4 299 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 ADA2Q9NZK5 511 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 CD300AQ9UGN4 299 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 RPS6KA6Q9UK32 745 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 MGAT4BQ9UQ53 548 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 MED31Q9Y3C7 131 aa10.4□□□□□ -0.74
YBX3-217ENST00000546164 ZNF469Q96JG9 3925 aaPredicted RBP10.4□□□□□ -0.74
YBX3-217ENST00000546164 ARPC4-TTLL3A0A0A6YYG9 625 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 SLC35F4A4IF30 521 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 SHISA9B4DS77 424 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 FFAR1O14842 300 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 CLOCKO15516 846 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 OR7A10O76100 309 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 OR6A2O95222 327 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 WNT11O96014 354 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 HIST1H2ABP04908 130 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 NCK1P16333 377 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 AHCYP23526 432 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 CD40P25942 277 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 HOXC12P31275 282 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 IL1RL1Q01638 556 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 ZNF672Q499Z4 452 aaPredicted RBP10.39□□□□□ -0.75
YBX3-217ENST00000546164 HIKESHIQ53FT3 197 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 ANKRD16Q6P6B7 361 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 KLHL24Q6TFL4 600 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 C16orf89Q6UX73 402 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 FKBP9P1Q75LS8 142 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 HIST3H2AQ7L7L0 130 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 ZNF627Q7L945 461 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 NANOGNBQ7Z5D8 188 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 GPR137CQ8N3F9 429 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 LRRC17Q8N6Y2 441 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 FAM169BQ8N8A8 192 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 CCDC197Q8NCU1 140 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 KBTBD8Q8NFY9 601 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 OR6X1Q8NH79 312 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 PFN4Q8NHR9 129 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 HIST1H2ACQ93077 130 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 SGTBQ96EQ0 304 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 TXNDC15Q96J42 360 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 CCL19Q99731 98 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 NELFAQ9H3P2 528 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 ANKRD19PQ9H560 264 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 CRLF2Q9HC73 371 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 GPR35Q9HC97 309 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 MOV10Q9HCE1 1003 aaKnown RBP10.39□□□□□ -0.75
YBX3-217ENST00000546164 C20orf141Q9NUB4 165 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 DCAF13Q9NV06 445 aaKnown RBP10.39□□□□□ -0.75
YBX3-217ENST00000546164 MED29Q9NX70 200 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 EGFL7Q9UHF1 273 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 MAGEL2Q9UJ55 1249 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 SAMD4AQ9UPU9 718 aaKnown RBP10.39□□□□□ -0.75
YBX3-217ENST00000546164 SNX13Q9Y5W8 968 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 ENPP4Q9Y6X5 453 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 FLNAP21333 2647 aaKnown RBP10.39□□□□□ -0.75
YBX3-217ENST00000546164 ACANP16112 2415 aa10.39□□□□□ -0.75
YBX3-217ENST00000546164 USF3Q68DE3 2245 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 A0A1W2PR80 420 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 NPIPB13A6NJU9 1138 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 ZNF726A6NNF4 738 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 NPIPB4C9JG80 1138 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 ABCD4O14678 606 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 GMNNO75496 209 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 DANCRP0C864 163 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 UMPSP11172 480 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 IFNGR1P15260 489 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 PAX1P15863 534 aa10.38□□□□□ -0.75
YBX3-217ENST00000546164 CDH2P19022 906 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms