RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	SPI1	P17947	270 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	EDNRA	P25101	427 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	CD38	P28907	300 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	CAMK2D	Q13557	499 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	SERPINA12	Q8IW75	414 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	NXPE2	Q96DL1	559 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	CNN2	Q99439	309 aa	Known RBP	13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	JAM3	Q9BX67	310 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	BEX1	Q9HBH7	125 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	ADAM30	Q9UKF2	790 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	MAB21L2	Q9Y586	359 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	IGHV3-20	A0A0C4DH32	117 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	TMEM150C	B9EJG8	249 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	PLG	P00747	810 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	IFNG	P01579	166 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	ACSM4	P0C7M7	580 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	DNASE1	P24855	282 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	BLK	P51451	505 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	RPS11	P62280	158 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	RPL6	Q02878	288 aa	Known RBP	13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	EGR4	Q05215	589 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	NTRK2	Q16620	822 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	CD276	Q5ZPR3	534 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	OR5M10	Q6IEU7	315 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF595	Q8IYB9	648 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	TCTN2	Q96GX1	697 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	C2orf72	A6NCS6	295 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	ELOA3D	A6NLF2	546 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	NUPL2	O15504	423 aa	Known RBP	13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	NDUFA2	O43678	99 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	FUT7	Q11130	342 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	ELOA3B	Q3SY89	546 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	HES5	Q5TA89	166 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	RPL13AP3	Q6NVV1	102 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF550	Q7Z398	422 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF433	Q8N7K0	673 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	ELOA3	Q8NG57	546 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	RFT1	Q96AA3	541 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	BRD7	Q9NPI1	651 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	PRDM9	Q9NQV7	894 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	NCDN	Q9UBB6	729 aa		13.45	□□□□□ -0.26
DDX55-209	ENST00000542286	TMEM72	A0PK05	275 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	SRPX2	O60687	465 aa	Predicted RBP	13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	ICOSLG	O75144	302 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	HRG	P04196	525 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	OR8G3P	P0DMU2	310 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	BTC	P35070	178 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	DGCR2	P98153	550 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	CFHR1	Q03591	330 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	PON3	Q15166	354 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	OR52H1	Q8NGJ2	320 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	MS4A3	Q96HJ5	214 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	KCNMB2	Q9Y691	235 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	C11orf98	E9PRG8	122 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	RAD1	O60671	282 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	SLC19A2	O60779	497 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	FZD7	O75084	574 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	SC5D	O75845	299 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	RAB3B	P20337	219 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	ZP3	P21754	424 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	F8A1	P23610	371 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	SOX2	P48431	317 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	ELOC	Q15369	112 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	KLHL26	Q53HC5	615 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	MARCH3	Q86UD3	253 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	OR6M1	Q8NGM8	313 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	HGD	Q93099	445 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	G6PC3	Q9BUM1	346 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	TTYH1	Q9H313	450 aa	Predicted RBP	13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	SYNDIG1	Q9H7V2	258 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	PDE7B	Q9NP56	450 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	CYSLTR2	Q9NS75	346 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	LANCL2	Q9NS86	450 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	SERTAD3	Q9UJW9	196 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	GMEB2	Q9UKD1	530 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	CACNG2	Q9Y698	323 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	RNF215	Q9Y6U7	377 aa		13.44	□□□□□ -0.26
DDX55-209	ENST00000542286	hCG_1807616	A0A1W2PRN6	198 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	TOX	O94900	526 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	UTS2	O95399	124 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NAT2	P11245	290 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NME1	P15531	152 aa	Known RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	SLC37A1	P57057	533 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	CTXN1	P60606	82 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	SIRPA	P78324	504 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	ZNF273	Q14593	569 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	CDK5R1	Q15078	307 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	SYT13	Q7L8C5	426 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	PXK	Q7Z7A4	578 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	DNAAF1	Q8NEP3	725 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	OR8K3	Q8NH51	312 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	THAP3	Q8WTV1	239 aa	Predicted RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	PIGK	Q92643	395 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	WBP1	Q96G27	269 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	MS4A7	Q9GZW8	240 aa	Predicted RBP	13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	SHARPIN	Q9H0F6	387 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	AUNIP	Q9H7T9	357 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	NOX4	Q9NPH5	578 aa		13.43	□□□□□ -0.26
DDX55-209	ENST00000542286	POLE3	Q9NRF9	147 aa		13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms