RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 UGT2B15P54855 530 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 LAPTM4AQ15012 233 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 LRRC36Q1X8D7 754 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 MICAQ29983 383 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 SLC25A53Q5H9E4 307 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 OTUD3Q5T2D3 398 aaPredicted RBP11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 ADAM5Q6NVV9 412 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 SHQ1Q6PI26 577 aaKnown RBP11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 C5orf46Q6UWT4 87 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 ATG4DQ86TL0 474 aaPredicted RBP11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 STK32CQ86UX6 486 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 TSPYL5Q86VY4 417 aaPredicted RBP11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 LILRA2Q8N149 483 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 GTPBP8Q8N3Z3 284 aaPredicted RBP11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 ZNF610Q8N9Z0 462 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 ATG16L2Q8NAA4 619 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 OR10G2Q8NGC3 310 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 SLC25A43Q8WUT9 341 aaPredicted RBP11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 TMEM255BQ8WV15 326 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 DHRS1Q96LJ7 313 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 ADAM19Q9H013 955 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 TMEM185BQ9H7F4 350 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 ZNF556Q9HAH1 456 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 VNN3Q9NY84 501 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 CHRNA9Q9UGM1 479 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 TMEM72A0PK05 275 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 SH3PXD2BA1X283 911 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 OR2M5A3KFT3 312 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 C7orf72A4D263 438 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 A8MVM7 634 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 B4DXG7 233 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 LINC01387J3KSC0 135 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 ZIC3O60481 467 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 CD8BP10966 210 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 IFI30P13284 250 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 ZNF708P17019 499 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 FKBP2P26885 142 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 SFTPDP35247 375 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 MAP2K6P52564 334 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 IL1RL1Q01638 556 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 SNCBQ16143 134 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 TMEM249Q2WGJ8 235 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 ZBTB49Q6ZSB9 765 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 ADGRG3Q86Y34 549 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 NRMQ8IXM6 262 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 RNF113BQ8IZP6 322 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 CNEP1R1Q8N9A8 125 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 OR4K5Q8NGD3 323 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 POC1BQ8TC44 478 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 SLC7A13Q8TCU3 470 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 STK35Q8TDR2 534 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 AKAP1Q92667 903 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 NRBF2Q96F24 287 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 TRMT61AQ96FX7 289 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 PLPPR2Q96GM1 343 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 KCNK17Q96T54 332 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 CIB1Q99828 191 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 TAPBPLQ9BX59 468 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 ESRP2Q9H6T0 727 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 MAN2C1Q9NTJ4 1040 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 NKX1-2Q9UD57 310 aaPredicted RBP11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 OAZ3Q9UMX2 235 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 TMEM5Q9Y2B1 443 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 ORC6Q9Y5N6 252 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 TRRAPQ9Y4A5 3859 aa11.05□□□□□ -0.64
CLSTN3-208ENST00000538933 A0A087WUU8 490 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 ZNF208O43345 1280 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 PIP5K1CO60331 668 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 THY1P04216 161 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 SAGP10523 405 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 ANXA8P13928 327 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 CDKN1AP38936 164 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 HMGA2P52926 109 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 CLDN15P56746 228 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 GUSBP1Q15486 140 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 TAF11Q15544 211 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 SYT14P1Q58G82 188 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 PDSS1Q5T2R2 415 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 OR2A2Q6IF42 318 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 TBPL2Q6SJ96 375 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 WDR88Q6ZMY6 472 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 MBOAT2Q6ZWT7 520 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 UBQLNLQ8IYU4 475 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 ARIH2OSQ8N7S6 290 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 AQP11Q8NBQ7 271 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 OR9Q2Q8NGE9 314 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 OR4C15Q8NGM1 316 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 PFN4Q8NHR9 129 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 GNPDA2Q8TDQ7 276 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 SGTBQ96EQ0 304 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 OR5B2Q96R09 309 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 NPAS1Q99742 590 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 PRSS27Q9BQR3 290 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 TMEM43Q9BTV4 400 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 SLC19A3Q9BZV2 496 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 RASSF4Q9H2L5 321 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 NTN4Q9HB63 628 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 LPAR3Q9UBY5 353 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 MGAT4BQ9UQ53 548 aa11.04□□□□□ -0.64
CLSTN3-208ENST00000538933 AP4B1Q9Y6B7 739 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms