RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 RPS4Y2Q8TD47 263 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 SMIM4Q8WVI0 70 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 LIPHQ8WWY8 451 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 RGP1Q92546 391 aaPredicted RBP11.97□□□□□ -0.49
LDLR-203ENST00000535915 TTC9Q92623 222 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 DACT3Q96B18 629 aaPredicted RBP11.97□□□□□ -0.49
LDLR-203ENST00000535915 ZNF524Q96C55 264 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 KTI12Q96EK9 354 aaPredicted RBP11.97□□□□□ -0.49
LDLR-203ENST00000535915 SLC46A1Q96NT5 459 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 NARFLQ9H6Q4 476 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 C12orf10Q9HB07 376 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 EXOSC3Q9NQT5 275 aaKnown RBP11.97□□□□□ -0.49
LDLR-203ENST00000535915 LANCL2Q9NS86 450 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 MOKQ9UQ07 419 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 KLHDC2Q9Y2U9 406 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 NUP210LQ5VU65 1888 aa11.97□□□□□ -0.49
LDLR-203ENST00000535915 AIPO00170 330 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 GSTZ1O43708 216 aaPredicted RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 ITGA10O75578 1167 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 APEHP13798 732 aaKnown RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 CD38P28907 300 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 TACR3P29371 465 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 GDNFP39905 211 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 CLDN12P56749 244 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 RPL18Q07020 188 aaKnown RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 DEFB133Q30KQ1 61 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 SYT13Q7L8C5 426 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 GLRX5Q86SX6 157 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 FAM174AQ8TBP5 190 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 TSLPQ969D9 159 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 DNAJA3Q96EY1 480 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 LCORQ96JN0 433 aaPredicted RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 KLHDC3Q9BQ90 382 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 OR51J1Q9H342 316 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 UCK1Q9HA47 277 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 ANKRD10Q9NXR5 420 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 ING4Q9UNL4 249 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 V9GY05 133 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 UNC13CQ8NB66 2214 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 IGHV1OR15-9A0A0B4J2B8 117 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 TVP23AA6NH52 213 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 DCTN6O00399 190 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 CTDSPLO15194 276 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 NOS1APO75052 506 aaPredicted RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 H2AFB2P0C5Z0 115 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 UQCRC1P31930 480 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 KLF9Q13886 244 aaPredicted RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 LIPNQ5VXI9 398 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 SLC22A10Q63ZE4 541 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 FAM199XQ6PEV8 388 aaPredicted RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 POMZP3Q6PJE2 187 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 FCRLAQ7L513 359 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 SERPINA12Q8IW75 414 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 EXD3Q8N9H8 876 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 GCDHQ92947 438 aaPredicted RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 RNF166Q96A37 237 aaPredicted RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 CMTM3Q96MX0 182 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 OR2M2Q96R28 347 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 C7orf50Q9BRJ6 194 aaKnown RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 LIN7BQ9HAP6 207 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 DIABLOQ9NR28 239 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 CUTCQ9NTM9 273 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 MRPL15Q9P015 296 aaKnown RBP11.96□□□□□ -0.49
LDLR-203ENST00000535915 IKZF2Q9UKS7 526 aa11.96□□□□□ -0.49
LDLR-203ENST00000535915 SPAG17Q6Q759 2223 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 CDC14CA4D256 554 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 FITM1A5D6W6 292 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 HIST1H2ABP04908 130 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 HIST3H2AQ7L7L0 130 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 KCTD20Q7Z5Y7 419 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 OR5AK2Q8NH90 309 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 HIST1H2ACQ93077 130 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 TAAR8Q969N4 342 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 TSPAN32Q96QS1 320 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 B3GNT4Q9C0J1 378 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 TCF7L1Q9HCS4 588 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 SLC2A4RGQ9NR83 387 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 MRM2Q9UI43 246 aaKnown RBP11.96□□□□□ -0.5
LDLR-203ENST00000535915 LAMP5Q9UJQ1 280 aa11.96□□□□□ -0.5
LDLR-203ENST00000535915 MRTO4Q9UKD2 239 aaKnown RBP11.96□□□□□ -0.5
LDLR-203ENST00000535915 ANKRD61A6NGH8 418 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 HCRTR2O43614 444 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 ICOSLGO75144 302 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 SOX2P48431 317 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 DYRK1AQ13627 763 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 ALKBH1Q13686 389 aaKnown RBP11.95□□□□□ -0.5
LDLR-203ENST00000535915 MESTQ5EB52 335 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 CD276Q5ZPR3 534 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 TIGD4Q8IY51 512 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 OR6N2Q8NGY6 317 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 GIMAP1Q8WWP7 306 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 SLC7A5P2Q9GIP4 190 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 NRSN2Q9GZP1 204 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 SLITRK2Q9H156 845 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 FRRS1LQ9P0K9 344 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 COL5A1P20908 1838 aaPredicted RBP11.95□□□□□ -0.5
LDLR-203ENST00000535915 FRG2CA6NGY1 282 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 SDC3O75056 442 aa11.95□□□□□ -0.5
LDLR-203ENST00000535915 ZNF217O75362 1048 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms