RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	ITCH	Q96J02	903 aa		10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	NAA11	Q9BSU3	229 aa	Predicted RBP	10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	SF3B5	Q9BWJ5	86 aa	Known RBP	10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	C1QTNF6	Q9BXI9	259 aa		10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	OR11A1	Q9GZK7	315 aa		10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	SLC7A10	Q9NS82	523 aa		10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	ATP23	Q9Y6H3	246 aa		10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	NUP214	P35658	2090 aa	Predicted RBP	10.08	□□□□□ -0.8
CTNND1-238	ENST00000534647	RNF103-CHMP3	A0A140T963	221 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	KRT36	O76013	467 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	ANP32D	O95626	131 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	WNT11	O96014	354 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	OR12D1	P0DN82	309 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	SRD5A1	P18405	259 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	RYK	P34925	604 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	SLC1A3	P43003	542 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	NR4A2	P43354	598 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	IDH2	P48735	452 aa	Known RBP	10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	PDLIM4	P50479	330 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	POLR2H	P52434	150 aa	Known RBP	10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	OR2B6	P58173	313 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	TXNL4A	P83876	142 aa	Known RBP	10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	LRRC74A	Q0VAA2	488 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	FUT5	Q11128	374 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	TRAP1	Q12931	704 aa	Known RBP	10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	TRIM25	Q14258	630 aa	Known RBP	10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	RCN1	Q15293	331 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	TSPO2	Q5TGU0	170 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	ANXA8L1	Q5VT79	327 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	MZT2A	Q6P582	158 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	PAQR6	Q6TCH4	344 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	OLIG3	Q7RTU3	272 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	CLEC4F	Q8N1N0	589 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	ZIC4	Q8N9L1	334 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	POMGNT2	Q8NAT1	580 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	HIPK4	Q8NE63	616 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	SLC26A7	Q8TE54	656 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	DDIT4L	Q96D03	193 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	NEURL3	Q96EH8	262 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	RSRC1	Q96IZ7	334 aa	Known RBP	10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	CGREF1	Q99674	301 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	MUC13	Q9H3R2	512 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	UPB1	Q9UBR1	384 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	CGGBP1	Q9UFW8	167 aa	Predicted RBP	10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	OSGIN1	Q9UJX0	560 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647	KCNS2	Q9ULS6	477 aa		10.07	□□□□□ -0.8
CTNND1-238	ENST00000534647		A0A096LPI6	279 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	TMED7-TICAM2	A0A0A6YYA0	188 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	LOC390937	A0A1W2PQ73	354 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	SLC35F4	A4IF30	521 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	AGAP5	A6NIR3	686 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	ATP6V1G2-DDX39B	F2Z307	99 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	SHOX	O15266	292 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	GMNN	O75496	209 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	SCG5	P05408	212 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	C8B	P07358	591 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	SLC6A2	P23975	617 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	IGFBP5	P24593	272 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	CCNI	Q14094	377 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	C3orf36	Q3SXR2	165 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	FAM120AOS	Q5T036	256 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	NANOGP8	Q6NSW7	305 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	CASP12	Q6UXS9	341 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	SPATA24	Q86W54	205 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	SLC15A3	Q8IY34	581 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	ARIH2OS	Q8N7S6	290 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	ZNF540	Q8NDQ6	660 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	OR8J3	Q8NGG0	315 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	OR4A15	Q8NGL6	344 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	CNOT9	Q92600	299 aa	Known RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	GTF2H4	Q92759	462 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	RAB8B	Q92930	207 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	MSI2	Q96DH6	328 aa	Known RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	WDR89	Q96FK6	387 aa	Predicted RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	TRNT1	Q96Q11	434 aa	Known RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	KCTD14	Q9BQ13	255 aa	Predicted RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	PIMREG	Q9BSJ6	248 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	C19orf24	Q9BVV8	132 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	MTHFD2L	Q9H903	347 aa	Predicted RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	NANOG	Q9H9S0	305 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	MOV10	Q9HCE1	1003 aa	Known RBP	10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	ABCD2	Q9UBJ2	740 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	CD300A	Q9UGN4	299 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	TMED7	Q9Y3B3	224 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	FKBP7	Q9Y680	259 aa		10.06	□□□□□ -0.8
CTNND1-238	ENST00000534647	CUBN	O60494	3623 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	10.05	□□□□□ -0.8	4e-6	■■□□□ 12.2
CTNND1-238	ENST00000534647	LOC100289279	A0A1B0GTE1	492 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647	TMEM72	A0PK05	275 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647	PRORSD1P	A6NEY8	169 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647		B9A039	149 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647	FXYD1	O00168	92 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647	HMGN4	O00479	90 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647	NME4	O00746	187 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647	RFXANK	O14593	260 aa		10.05	□□□□□ -0.8
CTNND1-238	ENST00000534647	BAG2	O95816	211 aa		10.05	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms