RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PANX2Q96RD6 677 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 CNN2Q99439 309 aaKnown RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 FMO2Q99518 471 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 SORT1Q99523 831 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 TCHPQ9BT92 498 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 TRIM62Q9BVG3 475 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 ROPN1BQ9BZX4 212 aaPredicted RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 OR11A1Q9GZK7 315 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 RNF167Q9H6Y7 350 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 ADAP2Q9NPF8 381 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 QPCTLQ9NXS2 382 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 KLHL28Q9NXS3 571 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 PSMC3IPQ9P2W1 217 aaPredicted RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 DEC1Q9P2X7 70 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 SHPKQ9UHJ6 478 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 ZNF223Q9UK11 482 aaPredicted RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 PEX16Q9Y5Y5 336 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 HEBP2Q9Y5Z4 205 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 PPIAL4EA0A075B759 164 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 TRBV6-6A0A0A6YYG2 114 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 CIB4A0PJX0 185 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 LAD1O00515 517 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 NBR2O15453 112 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ZNF861PO60384 105 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ICOSLGO75144 302 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 NPIPB7O75200 414 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 SPAG7O75391 227 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 NDUFB10O96000 172 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 SERPIND1P05546 499 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 CSF3P09919 207 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 GKN3PP0CG01 181 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 PPIAL4FP0DN26 164 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ADRB3P13945 408 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 RPS2P15880 293 aaKnown RBP1.83□□□□□ -2.12
CD44-238ENST00000534296 ZNF24P17028 368 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 AK4P27144 223 aaPredicted RBP1.83□□□□□ -2.12
CD44-238ENST00000534296 UBE2AP49459 152 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 TPMTP51580 245 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 GNB2P62879 340 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 KCNJ2P63252 427 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ACVR1Q04771 509 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ECH1Q13011 328 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 MAJINQ3KP22 176 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 C6orf226Q5I0X4 101 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 GPRC6AQ5T6X5 926 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 DHDDSQ86SQ9 333 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 OAFQ86UD1 273 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ZNF429Q86V71 674 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 TMEM61Q8N0U2 210 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ARIH2OSQ8N7S6 290 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 CATSPER1Q8NEC5 780 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 OR9K2Q8NGE7 335 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ACER1Q8TDN7 264 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 CXorf40AQ8TE69 158 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 SMARCD2Q92925 531 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 IL22RA2Q969J5 263 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 RPUSD4Q96CM3 377 aaKnown RBP1.83□□□□□ -2.12
CD44-238ENST00000534296 OR2M2Q96R28 347 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 OR8B4Q96RC9 309 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 TMEM246Q9BRR3 403 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 HDHD3Q9BSH5 251 aaPredicted RBP1.83□□□□□ -2.12
CD44-238ENST00000534296 RIOK2Q9BVS4 552 aaKnown RBP1.83□□□□□ -2.12
CD44-238ENST00000534296 GON7Q9BXV9 100 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 SRMSQ9H3Y6 488 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 EML4Q9HC35 981 aaKnown RBP1.83□□□□□ -2.12
CD44-238ENST00000534296 ETNK2Q9NVF9 386 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 ASB3Q9Y575 518 aa1.83□□□□□ -2.12
CD44-238ENST00000534296 CHD4Q14839 1912 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 IGLV3-16A0A075B6K0 115 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 IGKV1D-8A0A087WSZ0 117 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 A0A0G2JN53 185 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 HEATR9A2RTY3 570 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 PRSS37A4D1T9 235 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 PSMB11A5LHX3 300 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 RSPH10B2B2RC85 870 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 C12orf77C9JDV5 145 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 TMX2-CTNND1H3BSU7 103 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 GOSR2O14653 212 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 HSD17B6O14756 317 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 SLC31A2O15432 143 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 DFNA5O60443 496 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 MED6O75586 246 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 FGF1P05230 155 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 RSPH10BP0C881 870 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 CHTF8P0CG12 524 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 CRISP2P16562 243 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 CNR1P21554 472 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 FDFT1P37268 417 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 TNNT2P45379 298 aaPredicted RBP1.82□□□□□ -2.12
CD44-238ENST00000534296 YAP1P46937 504 aaKnown RBP1.82□□□□□ -2.12
CD44-238ENST00000534296 YWHAGP61981 247 aaKnown RBP eCLIP1.82□□□□□ -2.12
CD44-238ENST00000534296 MECOMQ03112 1051 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 LRRC63Q05C16 580 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 ENPEPQ07075 957 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 VPS26BQ4G0F5 336 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 CASC10Q5T4H9 136 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 OR2G6Q5TZ20 316 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 FRMPD2BQ6IN97 320 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 TRIM40Q6P9F5 258 aa1.82□□□□□ -2.12
CD44-238ENST00000534296 C19orf35Q6ZS72 473 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms