RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TGFBR3Q03167 851 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 DGCR6Q14129 220 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 C9orf135Q5VTT2 229 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 PAMR1Q6UXH9 720 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 ABHD12BQ7Z5M8 362 aaPredicted RBP11.38□□□□□ -0.59
VPS28-216ENST00000533806 C20orf196Q8IYI0 205 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 RNF113BQ8IZP6 322 aaKnown RBP11.38□□□□□ -0.59
VPS28-216ENST00000533806 SLC7A13Q8TCU3 470 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 IGFBPL1Q8WX77 278 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 ACOT11Q8WXI4 607 aaPredicted RBP11.38□□□□□ -0.59
VPS28-216ENST00000533806 BCL2L2Q92843 193 aaPredicted RBP11.38□□□□□ -0.59
VPS28-216ENST00000533806 MBD6Q96DN6 1003 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 BPIFA2Q96DR5 249 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 ZNF837Q96EG3 531 aaPredicted RBP11.38□□□□□ -0.59
VPS28-216ENST00000533806 SGTBQ96EQ0 304 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 PLPPR2Q96GM1 343 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 EMC6Q9BV81 110 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 FNDC11Q9BVV2 318 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 NELFAQ9H3P2 528 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 GPR35Q9HC97 309 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 ACTR3BQ9P1U1 418 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 ALPK2Q86TB3 2170 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 ZNF587BE7ETH6 402 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 PIP5K1CO60331 668 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 ATE1O95260 518 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 IFNGR1P15260 489 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 CD53P19397 219 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 AHCYP23526 432 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 IFNA8P32881 189 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 IST1P53990 364 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 RPS4XP62701 263 aaKnown RBP11.37□□□□□ -0.59
VPS28-216ENST00000533806 MXRA7P84157 204 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 MS4A2Q01362 244 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 ROR2Q01974 943 aaKnown RBP11.37□□□□□ -0.59
VPS28-216ENST00000533806 PRKCDQ05655 676 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 RPL18Q07020 188 aaKnown RBP11.37□□□□□ -0.59
VPS28-216ENST00000533806 STK11Q15831 433 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 FBXW10Q5XX13 1052 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 ADAM5Q6NVV9 412 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 TBPL2Q6SJ96 375 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 ZNF627Q7L945 461 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 OR1K1Q8NGR3 316 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 OR6X1Q8NH79 312 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 MAGEE2Q8TD90 523 aaPredicted RBP11.37□□□□□ -0.59
VPS28-216ENST00000533806 MUCL1Q96DR8 90 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 NSMCE2Q96MF7 247 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 ALKBH3Q96Q83 286 aaPredicted RBP11.37□□□□□ -0.59
VPS28-216ENST00000533806 SEPHS2Q99611 448 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 NGBQ9NPG2 151 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 PRPF19Q9UMS4 504 aaKnown RBP11.37□□□□□ -0.59
VPS28-216ENST00000533806 HIF3AQ9Y2N7 669 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 HIVEP1P15822 2718 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 ROS1P08922 2347 aa11.37□□□□□ -0.59
VPS28-216ENST00000533806 TCRBV5S2A0A599 114 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 NPIPB13A6NJU9 1138 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 NPIPB4C9JG80 1138 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 C11orf98E9PRG8 122 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 BLOC1S5-TXNDC5H3BN57 136 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 AKAP8O43823 692 aaKnown RBP11.36□□□□□ -0.59
VPS28-216ENST00000533806 GMNNO75496 209 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 UBOX5O94941 541 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 RAF1P04049 648 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 HIST1H2ABP04908 130 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 ATP6V1B2P21281 511 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 AQP2P41181 271 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 SH3BGRP55822 239 aaPredicted RBP11.36□□□□□ -0.59
VPS28-216ENST00000533806 BSPH1Q075Z2 132 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 TRIM25Q14258 630 aaKnown RBP11.36□□□□□ -0.59
VPS28-216ENST00000533806 LAPTM4AQ15012 233 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 ACKR1Q16570 336 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 HIST3H3Q16695 136 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 HIKESHIQ53FT3 197 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 ANKRD16Q6P6B7 361 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 ZNF704Q6ZNC4 412 aaPredicted RBP11.36□□□□□ -0.59
VPS28-216ENST00000533806 TMPRSS11FQ6ZWK6 438 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 MBOAT2Q6ZWT7 520 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 SLC35D2Q76EJ3 337 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 HIST3H2AQ7L7L0 130 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 NANOGNBQ7Z5D8 188 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 NRMQ8IXM6 262 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 OR52N5Q8NH56 324 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 MOSPD2Q8NHP6 518 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 HIST1H2ACQ93077 130 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 TMEM54Q969K7 222 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 SLC7A6OSQ96CW6 309 aaPredicted RBP11.36□□□□□ -0.59
VPS28-216ENST00000533806 ADAD1Q96M93 576 aaKnown RBP11.36□□□□□ -0.59
VPS28-216ENST00000533806 MRPL13Q9BYD1 178 aaKnown RBP11.36□□□□□ -0.59
VPS28-216ENST00000533806 CXXC4Q9H2H0 198 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 ESRP2Q9H6T0 727 aaKnown RBP11.36□□□□□ -0.59
VPS28-216ENST00000533806 CRLF2Q9HC73 371 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 IL1RAPQ9NPH3 570 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 AMDHD2Q9Y303 409 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 VPS13CQ709C8 3753 aa11.36□□□□□ -0.59
VPS28-216ENST00000533806 ARPC4-TTLL3A0A0A6YYG9 625 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 A0A1W2PR80 420 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 hCG_2039718K7EN88 272 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 CDC42EP2O14613 210 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 ACOT8O14734 319 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 RNF13O43567 381 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 KRT33AO76009 404 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms