RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 RANBP3LQ86VV4 465 aaPredicted RBP4.06□□□□□ -1.76
CD44-220ENST00000525688 TRIM69Q86WT6 500 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 MCOLN2Q8IZK6 566 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 LIX1Q8N485 282 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 LRRC75AQ8NAA5 344 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 OR2T11Q8NH01 316 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 PIH1D2Q8WWB5 315 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 FAM131CQ96AQ9 280 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 OPALINQ96PE5 141 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 CSPG4P5Q96PW8 444 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 LPAR4Q99677 370 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 AGPAT1Q99943 283 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 SH3GL3Q99963 347 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 UPF3AQ9H1J1 476 aaKnown RBP4.06□□□□□ -1.76
CD44-220ENST00000525688 C2orf42Q9NWW7 574 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 STMN3Q9NZ72 180 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 PILRAQ9UKJ1 303 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 DIMT1Q9UNQ2 313 aaKnown RBP4.06□□□□□ -1.76
CD44-220ENST00000525688 KLHDC2Q9Y2U9 406 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 TIMM10BQ9Y5J6 103 aa4.06□□□□□ -1.76
CD44-220ENST00000525688 ZSWIM8A7E2V4 1837 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 LAMA2P24043 3122 aaKnown RBP4.05□□□□□ -1.76
CD44-220ENST00000525688 NEDD4P46934 1319 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 CNTNAP2Q9UHC6 1331 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 A0A1W2PNV4 684 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 PRSS37A4D1T9 235 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SHISA7A6NL88 538 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 ERI2A8K979 691 aaKnown RBP4.05□□□□□ -1.76
CD44-220ENST00000525688 E5RGE8 158 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 F5H6K3 240 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 H0YL77 283 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 DENRO43583 198 aaKnown RBP4.05□□□□□ -1.76
CD44-220ENST00000525688 SNAI2O43623 268 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 PCDH7O60245 1069 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 LMX1BO60663 402 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SH3BGRLO75368 114 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 KHDRBS3O75525 346 aaKnown RBP4.05□□□□□ -1.76
CD44-220ENST00000525688 AP2A2O94973 939 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 ETHE1O95571 254 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 IGLV2-11P01706 119 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 IFNA6P05013 189 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 ANXA5P08758 320 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 GSTT2P0CG29 244 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 GSTT2BP0CG30 244 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SLC35E2BP0CK96 405 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SLC35E2P0CK97 266 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SMIM10L1P0DMW3 83 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 PSKH1P11801 424 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 TBXA2RP21731 343 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 TEAD1P28347 426 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 CD1CP29017 333 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 ID1P41134 155 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SLC1A2P43004 574 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 KIR3DL2P43630 455 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 RGRP47804 291 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SERPINB9P50453 376 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 CCR8P51685 355 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 EFNB2P52799 333 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 LINC01547P58512 204 aaPredicted RBP4.05□□□□□ -1.76
CD44-220ENST00000525688 KRTAP10-11P60412 298 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 CHRNB3Q05901 458 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 KLRC3Q07444 240 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 C1orf61Q13536 156 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 CYTH1Q15438 398 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 ZNF542PQ5EBM4 170 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 STUMQ69YW2 141 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SLC25A47Q6Q0C1 308 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 TMEM207Q6UWW9 146 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 CEACAM20Q6UY09 585 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 HDDC2Q7Z4H3 204 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 GPBP1Q86WP2 473 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 CLEC4FQ8N1N0 589 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 ZNF786Q8N393 782 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 NECAP1Q8NC96 275 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SLC37A3Q8NCC5 494 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 STXBP6Q8NFX7 210 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 KBTBD8Q8NFY9 601 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 OR10V1Q8NGI7 309 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 OR5M1Q8NGP8 315 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 APOBEC4Q8WW27 367 aaKnown RBP4.05□□□□□ -1.76
CD44-220ENST00000525688 RAD51AP1Q96B01 352 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SMIM10Q96HG1 83 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 UHRF2Q96PU4 802 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 HSD17B14Q9BPX1 270 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 ZNF251Q9BRH9 671 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 MAP1LC3CQ9BXW4 147 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 SRRQ9GZT4 340 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 TOLLIPQ9H0E2 274 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 PORCNQ9H237 461 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 RNF41Q9H4P4 317 aaPredicted RBP4.05□□□□□ -1.76
CD44-220ENST00000525688 WDR55Q9H6Y2 383 aaPredicted RBP4.05□□□□□ -1.76
CD44-220ENST00000525688 ATP13A3Q9H7F0 1226 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 VIPAS39Q9H9C1 493 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 UGT1A10Q9HAW8 530 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 POLD4Q9HCU8 107 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 C1orf123Q9NWV4 160 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 ABCD2Q9UBJ2 740 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 LNPEPQ9UIQ6 1025 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 PILRBQ9UKJ0 227 aa4.05□□□□□ -1.76
CD44-220ENST00000525688 PRPF19Q9UMS4 504 aaKnown RBP4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms