RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ABCC3O15438 1527 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 SLIT1O75093 1534 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NUP188Q5SRE5 1749 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NALCNQ8IZF0 1738 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 TEX48A0A1B0GUV7 120 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ZNF724A8MTY0 619 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 EVPLLA8MZ36 301 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 LEUTXA8MZ59 168 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 SUPT3HB4E1H0 165 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 F8WDY8 70 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ZNF701M0R085 212 aaPredicted RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 ARPC5O15511 151 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PSMD3O43242 534 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 FGF19O95750 216 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 CDK1P06493 297 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 HOXC4P09017 264 aaPredicted RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 GIG44P09565 113 aaPredicted RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 SMIM6P0DI80 62 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PSKH1P11801 424 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 CCNB1P14635 433 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 CYP11B1P15538 503 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 FUT1P19526 365 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 DRD5P21918 477 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 IGFBP5P24593 272 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 UCP1P25874 307 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PSMA5P28066 241 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 CD40LGP29965 261 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 HNRNPH3P31942 346 aaKnown RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 UGT2B10P36537 528 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NAA10P41227 235 aaPredicted RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 MATKP42679 507 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 RPL35P42766 123 aaKnown RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 KCNJ1P48048 391 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 FHITP49789 147 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 TMEM33P57088 247 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 AP3S2P59780 193 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ERVS71-1P61550 626 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NCALDP61601 193 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ERVK-8P63133 956 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 CSNK1G2P78368 415 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 MRPS11P82912 194 aaKnown RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 CNTN2Q02246 1040 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 LRRC63Q05C16 580 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 SMCO1Q147U7 214 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 RPS6KA1Q15418 735 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ZNHIT3Q15649 155 aaPredicted RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 PCK2Q16822 640 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 LRRC36Q1X8D7 754 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 C5orf64Q2M2E5 130 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 TRIM16LQ309B1 348 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 TEX44Q53QW1 395 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ARMC12Q5T9G4 340 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ZNF470Q6ECI4 717 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ELP2Q6IA86 826 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 FRMPD2BQ6IN97 320 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 SLC25A25Q6KCM7 469 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NANOGP8Q6NSW7 305 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 RWDD4Q6NW29 188 aaKnown RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 RFWD3Q6PCD5 774 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PGAP1Q75T13 922 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 SSX9Q7RTT3 188 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 P4HA3Q7Z4N8 544 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PRSS42Q7Z5A4 293 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 YRDCQ86U90 279 aaKnown RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 NT5DC3Q86UY8 548 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ERI1Q8IV48 349 aaKnown RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 KATNAL2Q8IYT4 538 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 LRRC17Q8N6Y2 441 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 UBL4BQ8N7F7 174 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 OR2L5Q8NG80 312 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 OR13C5Q8NGS8 318 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 OR52J3Q8NH60 311 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 DTX3LQ8TDB6 740 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ACTRT1Q8TDG2 376 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 MAFIPQ8WZ33 124 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ESR2Q92731 530 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 TMBIM1Q969X1 311 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 C18orf25Q96B23 403 aaPredicted RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 OR5M11Q96RB7 305 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PANX1Q96RD7 426 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 KCNA7Q96RP8 456 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 SSX3Q99909 188 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 APOL2Q9BQE5 337 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 FERMT1Q9BQL6 677 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 TEKT3Q9BXF9 490 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 MROQ9BYG7 248 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 GSDMCQ9BYG8 508 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NLNQ9BYT8 704 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 NMUR2Q9GZQ4 415 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 SLC5A7Q9GZV3 580 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 GAL3ST2Q9H3Q3 398 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ADAP2Q9NPF8 381 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 ABCC13Q9NSE7 274 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PDP1Q9P0J1 537 aaPredicted RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 DHRS4-AS1Q9P1J3 65 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 PISDQ9UG56 409 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 TP53TG5Q9Y2B4 290 aa2.94□□□□□ -1.94
CD44-217ENST00000525348 UTP11Q9Y3A2 253 aaKnown RBP2.94□□□□□ -1.94
CD44-217ENST00000525348 TMED7Q9Y3B3 224 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms