RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 KIAA0930Q6ICG6 404 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 KIAA1211LQ6NV74 962 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 RNF111Q6ZNA4 994 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 SPRED1Q7Z699 444 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 S100A7AQ86SG5 101 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 ZNF546Q86UE3 836 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 CPNE9Q8IYJ1 553 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 SLC34A3Q8N130 599 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 SVBPQ8N300 66 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 Q8N402 240 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 YIPF7Q8N8F6 280 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 C15orf54Q8N8G6 183 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 FAM98AQ8NCA5 519 aaKnown RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 ATP6V1C2Q8NEY4 427 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 PROKR2Q8NFJ6 384 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 OR9A4Q8NGU2 314 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 RHEBL1Q8TAI7 183 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 NUBPLQ8TB37 319 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 MAPK15Q8TD08 544 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 RHBDD1Q8TEB9 315 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 ASB17Q8WXJ9 295 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 ULK4Q96C45 1275 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 LRRC46Q96FV0 321 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 PRR11Q96HE9 360 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 SMIM8Q96KF7 97 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 HARBI1Q96MB7 349 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 KREMEN1Q96MU8 473 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 DUX5Q96PT3 197 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 ACOX2Q99424 681 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 MTERF1Q99551 399 aaKnown RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 SLC38A3Q99624 504 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 URM1Q9BTM9 101 aaKnown RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 G6PC3Q9BUM1 346 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 WRAP53Q9BUR4 548 aaKnown RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 RIOK2Q9BVS4 552 aaKnown RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 HDAC8Q9BY41 377 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 HEXA-AS1Q9H8Q6 139 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 AKIRIN1Q9H9L7 192 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 FKRPQ9H9S5 495 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 MEAF6Q9HAF1 191 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 SGK2Q9HBY8 427 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 LHX9Q9NQ69 397 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 ABHD10Q9NUJ1 306 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 WSB2Q9NYS7 404 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 ERRFI1Q9UJM3 462 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 FZD4Q9ULV1 537 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 PCDHA13Q9Y5I0 950 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 PCYT1BQ9Y5K3 369 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-216ENST00000523088 V9GYS6 101 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 CABIN1Q9Y6J0 2220 aa6.9□□□□□ -1.3
HDAC3-216ENST00000523088 MAP1BP46821 2468 aaKnown RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 HYKKA2RU49 373 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 LIPT2A6NK58 231 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 HSPB2A8KAH6 182 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 METTL12A8MUP2 240 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 E5RJQ4 531 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 M0R3G1 203 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 CDX4O14627 284 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 PDCD5O14737 125 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 ANKRD28O15084 1053 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 HPGDSO60760 199 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 TBL1XO60907 577 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 GLSO94925 669 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 LSM8O95777 96 aaKnown RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 TRUB2O95900 331 aaKnown RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 IGLV3-25P01717 112 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 BPGMP07738 259 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 C8orf89P0DMQ9 161 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 OSMP13725 252 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 MTHFD2P13995 350 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 CPN1P15169 458 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 SPNP16150 400 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 ACKR3P25106 362 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 IVDP26440 423 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 CD27P26842 260 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 CERS1P27544 350 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 CEACAM8P31997 349 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 PTTG1IPP53801 180 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 CDKN2DP55273 166 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 FAM3AP98173 230 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 PTP4A2Q12974 167 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 SRSF6Q13247 344 aaKnown RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 EXOSC2Q13868 293 aaKnown RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 RUNX2Q13950 521 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 SLC10A1Q14973 349 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 HSPB2Q16082 182 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 CARTPTQ16568 116 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 ALKBH6Q3KRA9 238 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 ZNF658BQ4V348 819 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-216ENST00000523088 PYY3Q5JQD4 70 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 NHLRC3Q5JS37 347 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 DNM1P34Q6PK57 102 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 ZNF773Q6PK81 442 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 IRF2BP2Q7Z5L9 587 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 FUNDC1Q8IVP5 155 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 LRRC75A-AS1Q8N1F1 130 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 FAM71CQ8NEG0 241 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 OR4Q3Q8NH05 313 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 OR14A16Q8NHC5 309 aa6.89□□□□□ -1.31
HDAC3-216ENST00000523088 GPR151Q8TDV0 419 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms