RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 SMARCD3Q6STE5 483 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 GTF2IRD2Q86UP8 949 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 LIX1LQ8IVB5 337 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 ZNF808Q8N4W9 903 aaPredicted RBP13.62□□□□□ -0.23
LSM1-203ENST00000520755 CA5BP1Q8WTZ4 195 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 ASB5Q8WWX0 329 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 GPX7Q96SL4 187 aaPredicted RBP13.62□□□□□ -0.23
LSM1-203ENST00000520755 ZNF556Q9HAH1 456 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 GCN1Q92616 2671 aaKnown RBP13.61□□□□□ -0.23
LSM1-203ENST00000520755 WIPF3A6NGB9 483 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 C11orf98E9PRG8 122 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 DVL2O14641 736 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 NDUFB2O95178 105 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 F13BP05160 661 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 OPRM1P35372 400 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 AQP4P55087 323 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 SLC17A1Q14916 467 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 POU4F3Q15319 338 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 SNCBQ16143 134 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 RFX4Q33E94 735 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 ZIK1Q3SY52 487 aaPredicted RBP13.61□□□□□ -0.23
LSM1-203ENST00000520755 ANKDD1AQ495B1 522 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 ALG10Q5BKT4 473 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 SLC43A2Q8N370 569 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 IQCF1Q8N6M8 205 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 OR4Q3Q8NH05 313 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 GMPPAQ96IJ6 420 aaPredicted RBP13.61□□□□□ -0.23
LSM1-203ENST00000520755 SFXN3Q9BWM7 321 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 TOR3AQ9H497 397 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 C8orf4Q9NR00 106 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 TBC1D23Q9NUY8 699 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 KLHL9Q9P2J3 617 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 ADAM18Q9Y3Q7 739 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 FLNCQ14315 2725 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 ALPK2Q86TB3 2170 aa13.61□□□□□ -0.23
LSM1-203ENST00000520755 BHLHE40O14503 412 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 SS18L1O75177 396 aaPredicted RBP13.6□□□□□ -0.23
LSM1-203ENST00000520755 PPP1R3DO95685 299 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 HIST1H2ABP04908 130 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 CRHP06850 196 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 AGAP20933 346 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 AGTR1P30556 359 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 SLC16A1P53985 500 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 CRISP1P54107 249 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 PRPS1P60891 318 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 POU3F1Q03052 451 aaPredicted RBP13.6□□□□□ -0.23
LSM1-203ENST00000520755 CLEC12AQ5QGZ9 265 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 TMEM201Q5SNT2 666 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 RPL13AP3Q6NVV1 102 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 VWA1Q6PCB0 445 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 FAM214BQ7L5A3 538 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 HIST3H2AQ7L7L0 130 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 FAM122BQ7Z309 247 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 GPAT4Q86UL3 456 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 TUSC5Q8IXB3 177 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 OR9K2Q8NGE7 335 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 HIST1H2ACQ93077 130 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 ZNF775Q96BV0 537 aaPredicted RBP13.6□□□□□ -0.23
LSM1-203ENST00000520755 TSPAN32Q96QS1 320 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 KATNB1Q9BVA0 655 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 HELZ2Q9BYK8 2649 aaKnown RBP13.6□□□□□ -0.23
LSM1-203ENST00000520755 RIBC2Q9H4K1 309 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 C12orf49Q9H741 205 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 NRIP3Q9NQ35 241 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 GLRX2Q9NS18 164 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 SMPD3Q9NY59 655 aaPredicted RBP13.6□□□□□ -0.23
LSM1-203ENST00000520755 ZNF629Q9UEG4 869 aaPredicted RBP13.6□□□□□ -0.23
LSM1-203ENST00000520755 RASD1Q9Y272 281 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 EMC9Q9Y3B6 208 aa13.6□□□□□ -0.23
LSM1-203ENST00000520755 IGKV3D-15A0A087WSY6 115 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 LOC102725191A0A1B0GVB3 256 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 NKX2-6A6NCS4 301 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 ZAR1LA6NP61 321 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 EEF1E1-BLOC1S5C9J1V9 151 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 H3BN98 237 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 EEF1E1O43324 174 aaKnown RBP13.59□□□□□ -0.23
LSM1-203ENST00000520755 RNF13O43567 381 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 SERPINI2O75830 405 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 TNFSF13O75888 250 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 SMNDC1O75940 238 aaKnown RBP eCLIP13.59□□□□□ -0.23
LSM1-203ENST00000520755 CLDN14O95500 239 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 IL18BPO95998 194 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 IGHMP01871 453 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 YES1P07947 543 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 AHCYP23526 432 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 SLC6A6P31641 620 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 NTF4P34130 210 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 VHLP40337 213 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 KIR2DL2P43627 348 aaPredicted RBP13.59□□□□□ -0.23
LSM1-203ENST00000520755 RAD23AP54725 363 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 ESRRGP62508 458 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 NPRL3Q12980 569 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 GUSBP1Q15486 140 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 TMEM236Q5W0B7 351 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 TMEM225Q6GV28 225 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 IZUMO2Q6UXV1 221 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 PXKQ7Z7A4 578 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 ZIC4Q8N9L1 334 aa13.59□□□□□ -0.23
LSM1-203ENST00000520755 RELL2Q8NC24 303 aaPredicted RBP13.59□□□□□ -0.23
LSM1-203ENST00000520755 LILRB4Q8NHJ6 448 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms