RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ACAA2P42765 397 aaKnown RBP9.3□□□□□ -0.92
DDX41-216ENST00000513562 GIPRP48546 466 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 CCT5P48643 541 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 PTDSS1P48651 473 aaKnown RBP9.3□□□□□ -0.92
DDX41-216ENST00000513562 ATP4BP51164 291 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 CLDN8P56748 225 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 LCN2P80188 198 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 PIGFQ07326 219 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 PCLAFQ15004 111 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 SYPL1Q16563 259 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 KLF17Q5JT82 389 aaPredicted RBP9.3□□□□□ -0.92
DDX41-216ENST00000513562 PHYHD1Q5SRE7 291 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 TMEM154Q6P9G4 183 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 ZNF813Q6ZN06 617 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 LRRC74BQ6ZQY2 392 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 ZCCHC23Q6ZST2 131 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 BCL6BQ8N143 479 aaPredicted RBP9.3□□□□□ -0.92
DDX41-216ENST00000513562 CADM2Q8N3J6 435 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 STK35Q8TDR2 534 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 TMIGD2Q96BF3 282 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 TIMD4Q96H15 378 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 OXGR1Q96P68 337 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 GAL3ST1Q99999 423 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 DENND2DQ9H6A0 471 aaPredicted RBP9.3□□□□□ -0.92
DDX41-216ENST00000513562 SEC14L4Q9UDX3 406 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 TBK1Q9UHD2 729 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 GPR160Q9UJ42 338 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 PYCARDQ9ULZ3 195 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 CACNG2Q9Y698 323 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 M0R3G1 203 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 AKAP8O43823 692 aaKnown RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 TRIM13O60858 407 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 ALX3O95076 343 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 RAB36O95755 333 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 CLPTM1O96005 669 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 C1QCP02747 245 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 DBIP07108 87 aaKnown RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 GKN3PP0CG01 181 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 KLF3P57682 345 aaPredicted RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 COPZ1P61923 177 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 CKAP4Q07065 602 aaKnown RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 SRSF4Q08170 494 aaKnown RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 CHI3L2Q15782 390 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 FBLN7Q53RD9 439 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 RGS7BPQ6MZT1 257 aaPredicted RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 USP51Q70EK9 711 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 ANKRD46Q86W74 232 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 ZNF584Q8IVC4 421 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 C20orf196Q8IYI0 205 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 SNX33Q8WV41 574 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 RAB1CQ92928 201 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 SLC25A36Q96CQ1 311 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 TRIM44Q96DX7 344 aaPredicted RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 TSPAN32Q96QS1 320 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 DPY30Q9C005 99 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 MTHFD2LQ9H903 347 aaPredicted RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 RLIMQ9NVW2 624 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 ASIC5Q9NY37 505 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 MARCOQ9UEW3 520 aaPredicted RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 LEF1Q9UJU2 399 aaPredicted RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 MID2Q9UJV3 735 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 PURGQ9UJV8 347 aaKnown RBP9.29□□□□□ -0.92
DDX41-216ENST00000513562 FBXL3Q9UKT7 428 aa9.29□□□□□ -0.92
DDX41-216ENST00000513562 A0A1B0GUS0 222 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 LOC102725191A0A1B0GVB3 256 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 PRSS51A0A1B0GVH4 220 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 SLC22A23A1A5C7 686 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 M0QZ24 198 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 NPHS1O60500 1241 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 FOXH1O75593 365 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 UBL3O95164 117 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 KNG1P01042 644 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 B4GALT1P15291 398 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 ZNF250P15622 560 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 GTF2E2P29084 291 aaKnown RBP9.28□□□□□ -0.92
DDX41-216ENST00000513562 LSP1P33241 339 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 CHI3L1P36222 383 aaPredicted RBP9.28□□□□□ -0.92
DDX41-216ENST00000513562 RPS5P46782 204 aaKnown RBP9.28□□□□□ -0.92
DDX41-216ENST00000513562 SELENOVP59797 346 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 RAB1AP62820 205 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 EGR4Q05215 589 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 C1DQ13901 141 aaKnown RBP9.28□□□□□ -0.92
DDX41-216ENST00000513562 RAB39AQ14964 217 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 MFSD13AQ14CX5 517 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 HFEQ30201 348 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 ANXA8L1Q5VT79 327 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 ZNF836Q6ZNA1 936 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 RHOUQ7L0Q8 258 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 TRMT10CQ7L0Y3 403 aaKnown RBP9.28□□□□□ -0.92
DDX41-216ENST00000513562 ZNF771Q7L3S4 317 aaPredicted RBP9.28□□□□□ -0.92
DDX41-216ENST00000513562 AGR3Q8TD06 166 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 KTI12Q96EK9 354 aaPredicted RBP9.28□□□□□ -0.92
DDX41-216ENST00000513562 LRR1Q96L50 414 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 CCT8L2Q96SF2 557 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 CITED1Q99966 193 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 SLC35A5Q9BS91 424 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 SAP30LQ9HAJ7 183 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 MMP26Q9NRE1 261 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 SLCO1C1Q9NYB5 712 aa9.28□□□□□ -0.92
DDX41-216ENST00000513562 AUP1Q9Y679 476 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms