RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 GABRB1P18505 474 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 IL3RAP26951 378 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 PPP1CBP62140 327 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 RPS21P63220 83 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 FAM110CQ1W6H9 321 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 OR10D4PQ8NGN7 298 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 IFI44Q8TCB0 444 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 BLNKQ8WV28 456 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 C12orf42Q96LP6 360 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 WDR92Q96MX6 357 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 FYTTD1Q96QD9 318 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 PIGQQ9BRB3 760 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 EDEM2Q9BV94 578 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 RBM24Q9BX46 236 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 JAM3Q9BX67 310 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 RNF208Q9H0X6 261 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 PREX2Q70Z35 1606 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 ZCWPW2A0A1B0GU75 182 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 PHF1O43189 567 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 PEX10O60683 326 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 USP2O75604 605 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 ID2Q02363 134 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 MBTPS1Q14703 1052 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 GGNBP1Q5YKI7 109 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 Q6ZVL8 140 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 HSD17B13Q7Z5P4 300 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 CCNL2Q96S94 520 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 CDCA4Q9BXL8 241 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 WDR76Q9H967 626 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 HEYLQ9NQ87 328 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 FLVCR2Q9UPI3 526 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 CSAG2Q9Y5P2 127 aa10.44□□□□□ -0.74
LIMCH1-208ENST00000508501 A6NDN8 102 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 HOXC11O43248 304 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 SDHBP21912 280 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 PLCXD3Q63HM9 321 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 IL20RBQ6UXL0 311 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 OR51A2Q8NGJ7 313 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 FBXO27Q8NI29 283 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 TMED6Q8WW62 240 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 APIPQ96GX9 242 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 PDLIM5Q96HC4 596 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 ATG101Q9BSB4 218 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 CREBZFQ9NS37 354 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 OR14J1Q9UGF5 321 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 VWDEQ8N2E2 1590 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 I6L893 689 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 MSX1P28360 303 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 BLVRBP30043 206 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 HTR6P50406 440 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 CASP6P55212 293 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 TSTD1Q8NFU3 115 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 LKAAEAR1Q8TD35 194 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 TTC9Q92623 222 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 FOXJ1Q92949 421 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 TMEM106AQ96A25 262 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 NOL4LQ96MY1 436 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 CPPED1Q9BRF8 314 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 MMP26Q9NRE1 261 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 NDRG2Q9UN36 371 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 LAMP3Q9UQV4 416 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 ZNF320A2RRD8 509 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 F5H5K5 113 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 H0Y8G0 127 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 TNFSF12O43508 249 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 HNRNPA2B1P22626 353 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 ALKBH1Q13686 389 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 SPRED3Q2MJR0 410 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 GGTA1PQ4G0N0 100 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 WDR73Q6P4I2 378 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 DPPA4Q7L190 304 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 RAB24Q969Q5 203 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 ZNF845Q96IR2 970 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 FBXL12Q9NXK8 326 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 TAS2R5Q9NYW4 299 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 POMT2Q9UKY4 750 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 GPR55Q9Y2T6 319 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 CNMDO75829 334 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 ZIC2O95409 532 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 RPLP1P05386 114 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 DBHP09172 617 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 F3P13726 295 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 MPGP29372 298 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 RPL12P30050 165 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 AMTP48728 403 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 SLC10A2Q12908 348 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 PDE7AQ13946 482 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 SIX1Q15475 284 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 ETFDHQ16134 617 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 OR2G6Q5TZ20 316 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 TMEM71Q6P5X7 295 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 BTNL3Q6UXE8 466 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 RANBP10Q6VN20 620 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 SLC35G3Q8N808 338 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 OR4F15Q8NGB8 312 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 IL1F10Q8WWZ1 152 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 C20orf24Q9BUV8 137 aa10.43□□□□□ -0.74
LIMCH1-208ENST00000508501 A0A087X0M5 115 aa10.42□□□□□ -0.74
LIMCH1-208ENST00000508501 A0A1B0GX30 115 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms