RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 PXKQ7Z7A4 578 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 SNX32Q86XE0 403 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 PRIMA1Q86XR5 153 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 C20orf196Q8IYI0 205 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 TMEM123Q8N131 208 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 IL17RDQ8NFM7 739 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 OR6T1Q8NGN1 323 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 RASSF5Q8WWW0 418 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 FAM168AQ92567 244 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 ZNF837Q96EG3 531 aaPredicted RBP11.09□□□□□ -0.63
PTPRF-214ENST00000496043 TXNDC15Q96J42 360 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 EMC6Q9BV81 110 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 NELFAQ9H3P2 528 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 NANOGQ9H9S0 305 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 YAE1D1Q9NRH1 226 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 MRGBPQ9NV56 204 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 POFUT2Q9Y2G5 429 aa11.09□□□□□ -0.63
PTPRF-214ENST00000496043 ABCA2Q9BZC7 2435 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 CPSF4LA6NMK7 179 aaKnown RBP11.08□□□□□ -0.64
PTPRF-214ENST00000496043 ZNF99A8MXY4 864 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-214ENST00000496043 B9A039 149 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 CHP2O43745 196 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 SASH3O75995 380 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 OR6A2O95222 327 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 IGKV3-15P01624 115 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 VIMP08670 466 aaKnown RBP11.08□□□□□ -0.64
PTPRF-214ENST00000496043 CSF3P09919 207 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 CECR9P0C854 216 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 TROVE2P10155 538 aaKnown RBP eCLIP11.08□□□□□ -0.64
PTPRF-214ENST00000496043 SLC25A16P16260 332 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 PCGF2P35227 344 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 CAPZA2P47755 286 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 POU3F1Q03052 451 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-214ENST00000496043 LOXL1Q08397 574 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-214ENST00000496043 VMACQ2NL98 169 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 NHLRC1Q6VVB1 395 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 CCDC80Q76M96 950 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 ZNF525Q8N782 197 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 GPR32P1Q8NGA4 272 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 OR6N1Q8NGY5 312 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 OR5J2Q8NH18 312 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 PROX1Q92786 737 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 MOGAT1Q96PD6 335 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 TNFRSF13CQ96RJ3 184 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 ECSITQ9BQ95 431 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 TMEM120AQ9BXJ8 343 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 CA10Q9NS85 328 aa11.08□□□□□ -0.64
PTPRF-214ENST00000496043 FBXO9Q9UK97 447 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-214ENST00000496043 PLCE1Q9P212 2302 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 TRAPPC13A5PLN9 417 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 LRRN3E7EW58 273 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 FBP2O00757 339 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 GPRIN2O60269 458 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 PDE5AO76074 875 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 NPPAP01160 153 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 HIST1H2ABP04908 130 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 OR4A8P0C604 315 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 ADORA3P0DMS8 318 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 CD247P20963 164 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 CALCRP30988 508 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 GZMMP51124 257 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 ARFIP2P53365 341 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 SNRPD2P62316 118 aaKnown RBP11.07□□□□□ -0.64
PTPRF-214ENST00000496043 ZP4Q12836 540 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 CAMK2DQ13557 499 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 NPTX1Q15818 432 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 TRMT5Q32P41 509 aaKnown RBP11.07□□□□□ -0.64
PTPRF-214ENST00000496043 MMEL1Q495T6 779 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 PHYHD1Q5SRE7 291 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 VHLLQ6RSH7 139 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 HIST3H2AQ7L7L0 130 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 RBM45Q8IUH3 476 aaKnown RBP11.07□□□□□ -0.64
PTPRF-214ENST00000496043 NUP37Q8NFH4 326 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 VANGL1Q8TAA9 524 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-214ENST00000496043 ADAMTS16Q8TE57 1224 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 C10orf105Q8TEF2 133 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 HIST1H2ACQ93077 130 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 LRRC58Q96CX6 371 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 MPP4Q96JB8 637 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 VRK1Q99986 396 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-214ENST00000496043 MED29Q9NX70 200 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 USP22Q9UPT9 525 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 FKBP7Q9Y680 259 aa11.07□□□□□ -0.64
PTPRF-214ENST00000496043 TLN2Q9Y4G6 2542 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 NSD1Q96L73 2696 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-214ENST00000496043 KIAA1324LA8MWY0 1029 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-214ENST00000496043 C11orf98E9PRG8 122 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 SERPINI2O75830 405 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 CH25HO95992 272 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 THY1P04216 161 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 PDLIM4P50479 330 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 IDH3GP51553 393 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-214ENST00000496043 HGFACQ04756 655 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 NPRL3Q12980 569 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 EFNB3Q15768 340 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 ADIPOQQ15848 244 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 ZNF813Q6ZN06 617 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 SLC46A3Q7Z3Q1 461 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 MDP1Q86V88 176 aa11.06□□□□□ -0.64
PTPRF-214ENST00000496043 OR8J3Q8NGG0 315 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms