RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	SLC6A2	P23975	617 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	THBS4	P35443	961 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	SERPINF1	P36955	418 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	DSCR9	P59020	149 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	NCALD	P61601	193 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	SNRPD2	P62316	118 aa	Known RBP	10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	IL1RL1	Q01638	556 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	CHRNB3	Q05901	458 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	NPRL3	Q12980	569 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	C1D	Q13901	141 aa	Known RBP	10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	C3orf36	Q3SXR2	165 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	C1QTNF12	Q5T7M4	302 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	C5orf46	Q6UWT4	87 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	LINC00114	Q6XXX2	140 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	NET1	Q7Z628	596 aa	Predicted RBP	10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	UEVLD	Q8IX04	471 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	C20orf196	Q8IYI0	205 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	CDK20	Q8IZL9	346 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	GPR137C	Q8N3F9	429 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	DPP10	Q8N608	796 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	OR6T1	Q8NGN1	323 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	RNF217	Q8TC41	542 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	DYDC1	Q8WWB3	177 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	CKAP2	Q8WWK9	683 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	TAMM41	Q96BW9	452 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	SLC47A1	Q96FL8	570 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	ZNF75A	Q96N20	296 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	ANKRD27	Q96NW4	1050 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	ZNF317	Q96PQ6	595 aa	Predicted RBP	10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	CGREF1	Q99674	301 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	SPATA5L1	Q9BVQ7	753 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	PLK3	Q9H4B4	646 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	NPHS2	Q9NP85	383 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	INTS9	Q9NV88	658 aa	Known RBP	10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	B3GNT2	Q9NY97	397 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	USP22	Q9UPT9	525 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	TMEM129	A0AVI4	362 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	CPSF4L	A6NMK7	179 aa	Known RBP	10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	ZNF99	A8MXY4	864 aa	Predicted RBP	10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	EVPLL	A8MZ36	301 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	FBP2	O00757	339 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	PLPP3	O14495	311 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	B4GALT1	P15291	398 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	CBR1	P16152	277 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	IGFBP5	P24593	272 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	GZMM	P51124	257 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	PUDP	Q08623	228 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	CAMK2D	Q13557	499 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	GGTLC2	Q14390	218 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	MFSD13A	Q14CX5	517 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	EFNB3	Q15768	340 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	CYP51A1	Q16850	503 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	KRT80	Q6KB66	452 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	IL17REL	Q6ZVW7	336 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	SLC46A3	Q7Z3Q1	461 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	PHC2	Q8IXK0	858 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	SVOPL	Q8N434	492 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	FAM169B	Q8N8A8	192 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	SCAI	Q8N9R8	606 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	PIK3C3	Q8NEB9	887 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	ANKK1	Q8NFD2	765 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	NUP37	Q8NFH4	326 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	OR6S1	Q8NH40	331 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	VANGL1	Q8TAA9	524 aa	Predicted RBP	10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	FGFBP3	Q8TAT2	258 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	ZNF607	Q96SK3	696 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	TMEM43	Q9BTV4	400 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	BPESC1	Q9GZL8	116 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	KAT8	Q9H7Z6	458 aa	Known RBP	10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	MRPL39	Q9NYK5	338 aa	Known RBP	10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	LEF1	Q9UJU2	399 aa	Predicted RBP	10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	CORO2B	Q9UQ03	480 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	ANGPT4	Q9Y264	503 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	PMF1-BGLAP	U3KQ54	211 aa		10.07	□□□□□ -0.8
VTI1A-208	ENST00000494728	PRORSD1P	A6NEY8	169 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728		B9A039	149 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	C11orf98	E9PRG8	122 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	hCG_2039718	K7EN88	272 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728		M0QX08	132 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	FXYD1	O00168	92 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	KPNA4	O00629	521 aa	Predicted RBP	10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	EDF1	O60869	148 aa	Known RBP	10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	SASH3	O75995	380 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	PDE5A	O76074	875 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	ZNF14	P17017	642 aa	Predicted RBP	10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	TNFRSF1B	P20333	461 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	USF1	P22415	310 aa	Predicted RBP	10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	IL2RG	P31785	369 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	NR4A2	P43354	598 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	CAPZA2	P47755	286 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	PPOX	P50336	477 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	PDLIM4	P50479	330 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	SRSF2	Q01130	221 aa	Known RBP	10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	SNTB2	Q13425	540 aa	Known RBP	10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	CARTPT	Q16568	116 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	CHRFAM7A	Q494W8	412 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	ENTPD8	Q5MY95	495 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	SWT1	Q5T5J6	900 aa	Known RBP	10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	ZNF627	Q7L945	461 aa		10.06	□□□□□ -0.8
VTI1A-208	ENST00000494728	RANBP3L	Q86VV4	465 aa	Predicted RBP	10.06	□□□□□ -0.8

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