RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PRELID1Q9Y255 219 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 TCRBV16S1A1N1A0A5B0 115 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 TRIM3O75382 744 aaPredicted RBP15.06■□□□□ 0
CCDC88B-210ENST00000494566 TPOP07202 933 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 AQP2P41181 271 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 CCR5P51681 352 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 BTG1P62324 171 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 PUDPQ08623 228 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 BTN1A1Q13410 526 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 TMEM65Q6PI78 240 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 GINS4Q9BRT9 223 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 RTN4RQ9BZR6 473 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 LIN7BQ9HAP6 207 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 TNRC18O15417 2968 aaPredicted RBP15.05■□□□□ 0
CCDC88B-210ENST00000494566 PIN1P1O15428 100 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 WISP1O95388 367 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 RLN1P04808 185 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 LCN1P31025 176 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 NANOS3P60323 173 aaKnown RBP15.05■□□□□ 0
CCDC88B-210ENST00000494566 ZNF141Q15928 474 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 DMKNQ6E0U4 476 aaPredicted RBP15.05■□□□□ 0
CCDC88B-210ENST00000494566 ZNF550Q7Z398 422 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 SLC35F2Q8IXU6 374 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 ZNF615Q8N8J6 731 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 TSTD1Q8NFU3 115 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 OR11G2Q8NGC1 345 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 GAL3ST4Q96RP7 486 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 ZNF436Q9C0F3 470 aaPredicted RBP15.05■□□□□ 0
CCDC88B-210ENST00000494566 ZNF576Q9H609 170 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 FBXL21Q9UKT6 434 aa15.05■□□□□ 0
CCDC88B-210ENST00000494566 IGKV1D-42A0A075B6H8 117 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 A0A087WUJ7 227 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 ARPC5O15511 151 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 CLPSP04118 112 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 CD1CP29017 333 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 BLKP51451 505 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 AANATQ16613 207 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 GPALPP1Q8IXQ4 340 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 ZNF595Q8IYB9 648 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 ZSCAN1Q8NBB4 408 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 DVL3Q92997 716 aaPredicted RBP15.05■□□□□ -0
CCDC88B-210ENST00000494566 PMEPA1Q969W9 287 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 CNN2Q99439 309 aaKnown RBP15.05■□□□□ -0
CCDC88B-210ENST00000494566 ELF4Q99607 663 aaPredicted RBP15.05■□□□□ -0
CCDC88B-210ENST00000494566 NXF5Q9H1B4 397 aaKnown RBP15.05■□□□□ -0
CCDC88B-210ENST00000494566 HRASLSQ9HDD0 168 aa15.05■□□□□ -0
CCDC88B-210ENST00000494566 IGHV1OR15-9A0A0B4J2B8 117 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 C7orf66A4D0T2 115 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 HPGDP15428 266 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 LINC00303Q3SY05 128 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 TMEM151BQ8IW70 566 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 NPEPL1Q8NDH3 523 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 OR10AC1Q8NH08 325 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 FAM174AQ8TBP5 190 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 GFI1Q99684 422 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 GPR27Q9NS67 375 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 KCNN3Q9UGI6 736 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 C10orf142B7Z368 130 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 UBL3O95164 117 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 NSA2O95478 260 aaKnown RBP15.04■□□□□ -0
CCDC88B-210ENST00000494566 LIPCP11150 499 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 CFL1P23528 166 aaKnown RBP15.04■□□□□ -0
CCDC88B-210ENST00000494566 RBM34P42696 430 aaKnown RBP15.04■□□□□ -0
CCDC88B-210ENST00000494566 NRG3P56975 720 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 RAB14P61106 215 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 SIRPAP78324 504 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 GUCA2AQ02747 115 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 SQSTM1Q13501 440 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 ANGPT1Q15389 498 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 C2orf68Q2NKX9 166 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.04■□□□□ -0
CCDC88B-210ENST00000494566 LEG1Q6P5S2 330 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 MEIOBQ8N635 442 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 KCTD12Q96CX2 325 aaKnown RBP15.04■□□□□ -0
CCDC88B-210ENST00000494566 TCTN2Q96GX1 697 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 G6PC3Q9BUM1 346 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 EMC7Q9NPA0 242 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 UBQLN2Q9UHD9 624 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 FKBP7Q9Y680 259 aa15.04■□□□□ -0
CCDC88B-210ENST00000494566 SRPX2O60687 465 aaPredicted RBP15.03■□□□□ -0
CCDC88B-210ENST00000494566 SPI1P17947 270 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 CDKN2AP42771 156 aaKnown RBP15.03■□□□□ -0
CCDC88B-210ENST00000494566 CENPAP49450 140 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 EFNA3P52797 238 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 GBX2P52951 348 aaPredicted RBP15.03■□□□□ -0
CCDC88B-210ENST00000494566 RPS11P62280 158 aaKnown RBP eCLIP15.03■□□□□ -0
CCDC88B-210ENST00000494566 RIN1Q13671 783 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 SYNPRQ8TBG9 265 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 SFXN2Q96NB2 322 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 UBL7Q96S82 380 aaPredicted RBP15.03■□□□□ -0
CCDC88B-210ENST00000494566 ADOQ96SZ5 270 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 LMAN1LQ9HAT1 526 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 SERTAD3Q9UJW9 196 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 FREM2Q5SZK8 3169 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 FXYD6-FXYD2A0A087WZ82 144 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 RPS10-NUDT3A0A1W2PQS6 291 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 TMEM72A0PK05 275 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 ELOA3DA6NLF2 546 aaPredicted RBP15.03■□□□□ -0
CCDC88B-210ENST00000494566 G3V3Q6 166 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 KHNYNO15037 678 aaKnown RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms