RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 LINC01356Q8N9X3 169 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 PIK3C3Q8NEB9 887 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 BBS10Q8TAM1 723 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 UBASH3BQ8TF42 649 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 NEU4Q8WWR8 484 aaPredicted RBP10.91□□□□□ -0.66
SKA1-205ENST00000494518 SLC38A4Q969I6 547 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 ANKRD27Q96NW4 1050 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 SYT3Q9BQG1 590 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 MRPL37Q9BZE1 423 aaKnown RBP10.91□□□□□ -0.66
SKA1-205ENST00000494518 A4GALTQ9NPC4 353 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 MED29Q9NX70 200 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 TMEFF2Q9UIK5 374 aaPredicted RBP10.91□□□□□ -0.66
SKA1-205ENST00000494518 FZR1Q9UM11 496 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 USP22Q9UPT9 525 aa10.91□□□□□ -0.66
SKA1-205ENST00000494518 ARHGAP32A7KAX9 2087 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 TRAV36DV7A0A075B6V5 113 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 VSTM5A8MXK1 200 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 ZNF99A8MXY4 864 aaPredicted RBP10.9□□□□□ -0.66
SKA1-205ENST00000494518 LRRN3E7EW58 273 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 CLIC1O00299 241 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 UBDO15205 165 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 TCF21O43680 179 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 TPST1O60507 370 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 TACSTD2P09758 323 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 PAX7P23759 505 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 ARR3P36575 388 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 ALDH3B1P43353 468 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 POU3F1Q03052 451 aaPredicted RBP10.9□□□□□ -0.66
SKA1-205ENST00000494518 CAMK2DQ13557 499 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 MAD2L1BPQ15013 274 aaPredicted RBP10.9□□□□□ -0.66
SKA1-205ENST00000494518 ALG10BQ5I7T1 473 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 FAM69AQ5T7M9 428 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 LIPNQ5VXI9 398 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 ZNF813Q6ZN06 617 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 H1FNTQ75WM6 255 aaPredicted RBP10.9□□□□□ -0.66
SKA1-205ENST00000494518 UEVLDQ8IX04 471 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 MIER2Q8N344 545 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 ZNF786Q8N393 782 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 FAM169BQ8N8A8 192 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 GTF2H4Q92759 462 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 TXNDC15Q96J42 360 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 MAELQ96JY0 434 aaKnown RBP10.9□□□□□ -0.66
SKA1-205ENST00000494518 LPAR2Q9HBW0 351 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 BCL2L10Q9HD36 194 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 SDR39U1Q9NRG7 319 aaPredicted RBP10.9□□□□□ -0.66
SKA1-205ENST00000494518 KLHL14Q9P2G3 628 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 CMAHPQ9Y471 501 aa10.9□□□□□ -0.66
SKA1-205ENST00000494518 MS4A18H0YCH9 400 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 AKAP8O43823 692 aaKnown RBP10.89□□□□□ -0.67
SKA1-205ENST00000494518 OR2T1O43869 369 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 RGS9O75916 674 aaPredicted RBP10.89□□□□□ -0.67
SKA1-205ENST00000494518 B4GALT1P15291 398 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 NR4A1P22736 598 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 AQP1P29972 269 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 PTDSS1P48651 473 aaKnown RBP10.89□□□□□ -0.67
SKA1-205ENST00000494518 SEC24CP53992 1094 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 CDH15P55291 814 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 NCALDP61601 193 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 RIN1Q13671 783 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 MFSD13AQ14CX5 517 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 GSG1Q2KHT4 349 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 MS4A18Q3C1V0 323 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 ALKBH6Q3KRA9 238 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 GCNT6Q5T4J0 391 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 C6orf89Q6UWU4 347 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 MSANTD1Q6ZTZ1 278 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 LRP11Q86VZ4 500 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 C20orf196Q8IYI0 205 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 C10orf53Q8N6V4 93 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.89□□□□□ -0.67
SKA1-205ENST00000494518 WFDC6Q9BQY6 131 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 MOV10Q9HCE1 1003 aaKnown RBP10.89□□□□□ -0.67
SKA1-205ENST00000494518 THUMPD1Q9NXG2 353 aaKnown RBP10.89□□□□□ -0.67
SKA1-205ENST00000494518 SLC25A37Q9NYZ2 338 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 SLAMF8Q9P0V8 285 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 MYEF2Q9P2K5 600 aaKnown RBP10.89□□□□□ -0.67
SKA1-205ENST00000494518 POFUT2Q9Y2G5 429 aa10.89□□□□□ -0.67
SKA1-205ENST00000494518 A0A087WUJ7 227 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 C11orf98E9PRG8 122 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 SLCO1B7G3V0H7 640 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 M0R233 179 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 HPXP02790 462 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 BGLAPP02818 100 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 PATE4P0C8F1 98 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 ARAFP10398 606 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 HOXB9P17482 250 aaPredicted RBP10.88□□□□□ -0.67
SKA1-205ENST00000494518 COL8A2P25067 703 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 PRKAR1BP31321 381 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 GIPRP48546 466 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 RGS8P57771 180 aaPredicted RBP10.88□□□□□ -0.67
SKA1-205ENST00000494518 FADDQ13158 208 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 PMS2P3Q13401 168 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 TRMT5Q32P41 509 aaKnown RBP10.88□□□□□ -0.67
SKA1-205ENST00000494518 ELFN2Q5R3F8 820 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 MSRB3Q8IXL7 192 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 RFLNBQ8N5W9 214 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 GOLGA6L1Q8N7Z2 621 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 OR6N1Q8NGY5 312 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 HPS1Q92902 700 aa10.88□□□□□ -0.67
SKA1-205ENST00000494518 MRPL24Q96A35 216 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms