RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 GPRIN2O60269 458 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 GATBO75879 557 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 RAB3BP20337 219 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 EIF2B2P49770 351 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 TMEM205Q6UW68 189 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 LRRC28Q86X40 367 aaPredicted RBP19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 CEP76Q8TAP6 659 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 CHAC2Q8WUX2 184 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 C8orf44Q96CB5 159 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 OR14A2Q96R54 314 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 GFM1Q96RP9 751 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 EXTL2Q9UBQ6 330 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 ARL6IP5O75915 188 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 DXOO77932 396 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 FGF5P12034 268 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 PRKCAP17252 672 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 HTR3AP46098 478 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 NANOS3P60323 173 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 C17orf67Q0P5P2 114 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 SLC6A19Q695T7 634 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 UNQ9370/PRO34162Q6UXP9 181 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 PM20D2Q8IYS1 436 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 OR8K3Q8NH51 312 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 RNF138Q8WVD3 245 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 TMEM234Q8WY98 164 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 ADAD1Q96M93 576 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 GALNT9Q9HCQ5 603 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 CYSLTR2Q9NS75 346 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 MEN1O00255 615 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 PLGP00747 810 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 EIF4EP06730 217 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 OR8G3PP0DMU2 310 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 TPTEP56180 551 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 SELENBP1Q13228 472 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 TRIQKQ629K1 86 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 ZNF519Q8TB69 540 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 NPAS1Q99742 590 aa19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 AKIRIN1Q9H9L7 192 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 MRM2Q9UI43 246 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-208ENST00000492980 GDF9O60383 454 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 AKR7A3O95154 331 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 AHSA1O95433 338 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 NAGAP17050 411 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 CASP3P42574 277 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 RGS19P49795 217 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 ACKR1Q16570 336 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 MRPL14Q6P1L8 145 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 PRR23CQ6ZRP0 262 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 AKAP14Q86UN6 197 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 SAMD12Q8N8I0 201 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 OR5L2Q8NGL0 311 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 ST8SIA1Q92185 356 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 D6RAR5 112 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 XKRYO14609 159 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 UPK3AO75631 287 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 ABHD16AO95870 558 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 AHCYP23526 432 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 SUMO3P55854 103 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 OR2B6P58173 313 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 RPL27P61353 136 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 CEP78Q5JTW2 689 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 C5orf46Q6UWT4 87 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 ZNF517Q6ZMY9 492 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 TRILQ7L0X0 811 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 FAM220AQ7Z4H9 259 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 KCTD20Q7Z5Y7 419 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 SYT9Q86SS6 491 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 C1orf210Q8IVY1 113 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 TRMT10AQ8TBZ6 339 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 ZC3H10Q96K80 434 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 MFRPQ9BY79 579 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 WDR76Q9H967 626 aa19.06■□□□□ 0.64
CCDC88B-208ENST00000492980 FTCDNL1E5RQL4 147 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 PLPP3O14495 311 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 GPANK1O95872 356 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 PAHP00439 452 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 TACSTD2P09758 323 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 CLPPQ16740 277 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 AGAP6Q5VW22 663 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 BPHLQ86WA6 291 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 UBQLNLQ8IYU4 475 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 OR4M1Q8NGD0 313 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 OR6N2Q8NGY6 317 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 ZNF417Q8TAU3 575 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 HSD17B8Q92506 261 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 RGP1Q92546 391 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 RELTQ969Z4 430 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 AGAP4Q96P64 663 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 ZNF587Q96SQ5 575 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 SMAD5Q99717 465 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 TXNIPQ9H3M7 391 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 ZCCHC4Q9H5U6 513 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 MED11Q9P086 117 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 C19orf25Q9UFG5 118 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 ZNF281Q9Y2X9 895 aa19.05■□□□□ 0.64
CCDC88B-208ENST00000492980 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 A0A0G2JMP0 313 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 A0A0X1KG70 313 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 NOTOA8MTQ0 251 aa19.04■□□□□ 0.64
CCDC88B-208ENST00000492980 FLRT2O43155 660 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms