RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 EPHA4P54764 986 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 MED25Q71SY5 747 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 CMIPQ8IY22 773 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 EID2Q8N6I1 236 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 WDSUB1Q8N9V3 476 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 PPP1R35Q8TAP8 253 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 PDXPQ96GD0 296 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 ENKD1Q9H0I2 346 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 ZBP1Q9H171 429 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 DUSP21Q9H596 190 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 RAB9BQ9NP90 201 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 C1orf123Q9NWV4 160 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 HCRTR1O43613 425 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 PXNP49023 591 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-210ENST00000487017 MFGE8Q08431 387 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-210ENST00000487017 TM7SF3Q9NS93 570 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 LRP5O75197 1615 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 PRAMEF27A3QJZ7 478 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 ERVFC1P60507 584 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 EEF1A2Q05639 463 aaKnown RBP15.19■□□□□ 0.02
COL7A1-210ENST00000487017 PRAMEF9Q5VWM5 478 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 VASH1Q7L8A9 365 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-210ENST00000487017 PLPP6Q8IY26 295 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 PIGCQ92535 297 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 HAS2Q92819 552 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 LCORQ96JN0 433 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-210ENST00000487017 SLCO5A1Q9H2Y9 848 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 NDUFB11Q9NX14 153 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 MED16Q9Y2X0 877 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 HSBP1L1C9JCN9 74 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 GMDSO60547 372 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 HMGA1P17096 107 aaKnown RBP15.19■□□□□ 0.02
COL7A1-210ENST00000487017 S100A11P31949 105 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 VEGFBP49765 207 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 DUSP6Q16828 381 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 TMEM64Q6YI46 380 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 FAM26EQ8N5C1 309 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 PFN4Q8NHR9 129 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 KCNG3Q8TAE7 436 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 SLC19A3Q9BZV2 496 aa15.19■□□□□ 0.02
COL7A1-210ENST00000487017 MRPS28Q9Y2Q9 187 aaKnown RBP15.19■□□□□ 0.02
COL7A1-210ENST00000487017 HMGN4O00479 90 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 GLCEO94923 617 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 CD14P08571 375 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 FCGR2AP12318 317 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 CPEP16870 476 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 OPN5Q6U736 354 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 TMED7-TICAM2A0A0A6YYA0 188 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 GPX5O75715 221 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 GDF1P27539 372 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 SF3B4Q15427 424 aaKnown RBP eCLIP15.18■□□□□ 0.02
COL7A1-210ENST00000487017 TMEM201Q5SNT2 666 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 COL22A1Q8NFW1 1626 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-210ENST00000487017 DYNC2LI1Q8TCX1 351 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 STACQ99469 402 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 TMED7Q9Y3B3 224 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 LRIT2A6NDA9 550 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 RPS18P62269 152 aaKnown RBP15.18■□□□□ 0.02
COL7A1-210ENST00000487017 NKAIN4Q8IVV8 208 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 ZNF511Q8NB15 262 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 LOC100289279A0A1B0GTE1 492 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 ZAR1LA6NP61 321 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 TRAPPC2LH3BP13 241 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 SELENOFO60613 162 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 TK1P04183 234 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 SLC19A1P41440 591 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 BDH1Q02338 343 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 FAM3DQ96BQ1 224 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 PKMYT1Q99640 499 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-210ENST00000487017 PCDHGA1Q9Y5H4 931 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 SRP9P49458 86 aaKnown RBP15.18■□□□□ 0.02
COL7A1-210ENST00000487017 SLC51BQ86UW2 128 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 FAM174AQ8TBP5 190 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 C19orf12Q9NSK7 152 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 THAP10Q9P2Z0 257 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-210ENST00000487017 EMC9Q9Y3B6 208 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 FBXO7Q9Y3I1 522 aa15.18■□□□□ 0.02
COL7A1-210ENST00000487017 A8MXE2 369 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 ZNF44P15621 663 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 NAGAP17050 411 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 LRRC18Q8N456 261 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 SLC22A24Q8N4F4 322 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 PXT1Q8NFP0 134 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 RASD2Q96D21 266 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 LYSMD1Q96S90 227 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 NRAPQ86VF7 1730 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 STMND1H3BQB6 276 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 STK17BO94768 372 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 B3GALT4O96024 378 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 PGFP49763 221 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 LIM2P55344 173 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 MEP1BQ16820 701 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 OVCH1Q7RTY7 1134 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 SLC46A1Q96NT5 459 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 DUSP23Q9BVJ7 150 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 PMS2P2O95744 297 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 METRNLQ641Q3 311 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 ANKRD34AQ69YU3 496 aa15.17■□□□□ 0.02
COL7A1-210ENST00000487017 TANGO2Q6ICL3 276 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms