RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 OR6C65A6NJZ3 312 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 OR5H1A6NKK0 313 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 ZNF726A6NNF4 738 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 M0R3G1 203 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 H1F0P07305 194 aaKnown RBP12.97□□□□□ -0.33
USP4-212ENST00000486549 IFNGR1P15260 489 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 RHCEP18577 417 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 HOXC12P31275 282 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 BIDP55957 195 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 ROR2Q01974 943 aaKnown RBP12.97□□□□□ -0.33
USP4-212ENST00000486549 TGFBR3Q03167 851 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 RPL18Q07020 188 aaKnown RBP12.97□□□□□ -0.33
USP4-212ENST00000486549 CAMK2DQ13557 499 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 MELKQ14680 651 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 TESK1Q15569 626 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 TIMM23BQ5SRD1 257 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 OR7E24Q6IFN5 339 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 HMBOX1Q6NT76 420 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 TBPL2Q6SJ96 375 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 SLC35D2Q76EJ3 337 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 WDFY1Q8IWB7 410 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 TMEM123Q8N131 208 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 PIK3C3Q8NEB9 887 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 ACOT11Q8WXI4 607 aaPredicted RBP12.97□□□□□ -0.33
USP4-212ENST00000486549 MCUR1Q96AQ8 359 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 BPIFA2Q96DR5 249 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 MUCL1Q96DR8 90 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 C7orf34Q96L11 122 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 USB1Q9BQ65 265 aaKnown RBP12.97□□□□□ -0.33
USP4-212ENST00000486549 THTPAQ9BU02 230 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 LINC00470Q9BZP3 86 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 C1orf21Q9H246 121 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 NMNAT1Q9HAN9 279 aaPredicted RBP12.97□□□□□ -0.33
USP4-212ENST00000486549 NGBQ9NPG2 151 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 ACTR3BQ9P1U1 418 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 CCDC168Q8NDH2 2452 aa12.97□□□□□ -0.33
USP4-212ENST00000486549 A0A087WUU8 490 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 IGF2P01344 180 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 SEMG1P04279 462 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 F13BP05160 661 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 FABP3P05413 133 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 SAGP10523 405 aaPredicted RBP12.96□□□□□ -0.33
USP4-212ENST00000486549 ITGA2P17301 1181 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 MAKP20794 623 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 DNASE1P24855 282 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 LOXP28300 417 aaPredicted RBP12.96□□□□□ -0.33
USP4-212ENST00000486549 AQP2P41181 271 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 ART1P52961 327 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 ZP4Q12836 540 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 HIKESHIQ53FT3 197 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 PHYHD1Q5SRE7 291 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 RRM2BQ7LG56 351 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 P2RY8Q86VZ1 359 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 DHFR2Q86XF0 187 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 OR52J3Q8NH60 311 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 MOSPD2Q8NHP6 518 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 SEPHS2Q99611 448 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 PIP5K1AQ99755 562 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 UBTD1Q9HAC8 227 aa12.96□□□□□ -0.33
USP4-212ENST00000486549 ALPK2Q86TB3 2170 aa12.96□□□□□ -0.34
USP4-212ENST00000486549 EFCAB9A8MZ26 197 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 GYG2O15488 501 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 CLOCKO15516 846 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 GPR4P46093 362 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 ZNF83P51522 516 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 NR1H2P55055 460 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 MS4A2Q01362 244 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 SPIBQ01892 262 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 PRKCDQ05655 676 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 TRIM25Q14258 630 aaKnown RBP12.95□□□□□ -0.34
USP4-212ENST00000486549 CEACAM16Q2WEN9 425 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 DNAL1Q4LDG9 190 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 PODNL1Q6PEZ8 512 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 KLHL24Q6TFL4 600 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 SEZ6L2Q6UXD5 910 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 NHLRC1Q6VVB1 395 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 MBOAT2Q6ZWT7 520 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 C1orf162Q8NEQ5 155 aaPredicted RBP12.95□□□□□ -0.34
USP4-212ENST00000486549 OR1K1Q8NGR3 316 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 OR6N1Q8NGY5 312 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 SLC7A13Q8TCU3 470 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 MUS81Q96NY9 551 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 FOXC2Q99958 501 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 C1QTNF6Q9BXI9 259 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 MUC13Q9H3R2 512 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 ANKRD19PQ9H560 264 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 ESRP2Q9H6T0 727 aaKnown RBP12.95□□□□□ -0.34
USP4-212ENST00000486549 PLEKHF2Q9H8W4 249 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 CRLF2Q9HC73 371 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 GPR35Q9HC97 309 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 SLC17A5Q9NRA2 495 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 INIPQ9NRY2 104 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 NPAP1Q9NZP6 1156 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 ST6GALNAC2Q9UJ37 374 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 PLEKHA6Q9Y2H5 1048 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 SLC25A15Q9Y619 301 aa12.95□□□□□ -0.34
USP4-212ENST00000486549 TRAV27A0A087WT01 109 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 A0A096LPE4 126 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 TRBV4-1A0A0J9YWV2 114 aa12.94□□□□□ -0.34
USP4-212ENST00000486549 A0A1W2PPZ6 126 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms