RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 VKORC1Q9BQB6 163 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 KATNB1Q9BVA0 655 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 IFT27Q9BW83 186 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 TSSK6Q9BXA6 273 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 PLA2G12AQ9BZM1 189 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 VCXQ9H320 206 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 RIBC2Q9H4K1 309 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 EMC3Q9P0I2 261 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 ENOPH1Q9UHY7 261 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 ING1Q9UK53 422 aaPredicted RBP10.89□□□□□ -0.67
SDC1-206ENST00000482879 MEMO1Q9Y316 297 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 FLVCR1Q9Y5Y0 555 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 ZNF462Q96JM2 2506 aa10.89□□□□□ -0.67
SDC1-206ENST00000482879 ZNF724A8MTY0 619 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 TRAF3IP2O43734 574 aaPredicted RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 TOXO94900 526 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 PPP1R3DO95685 299 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 BCL10O95999 233 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 TMIGD3P0DMS9 266 aaPredicted RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 IFNGR1P15260 489 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 CEACAM8P31997 349 aaPredicted RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 PTDSS1P48651 473 aaKnown RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 CLDN17P56750 224 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 ESRRGP62508 458 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 TOP3AQ13472 1001 aaPredicted RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 GINS1Q14691 196 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 ACKR1Q16570 336 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 TMEM201Q5SNT2 666 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 RIPPLY2Q5TAB7 128 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 NHLRC1Q6VVB1 395 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 GCNT2Q8N0V5 402 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 MARVELD2Q8N4S9 558 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 ZIC4Q8N9L1 334 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 OR8D4Q8NGM9 314 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 ZFP3Q96NJ6 502 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 ERMAPQ96PL5 475 aaPredicted RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 ZNF385AQ96PM9 386 aaKnown RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 DMRTA2Q96SC8 542 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 GPX7Q96SL4 187 aaPredicted RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 TACO1Q9BSH4 297 aaKnown RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 POLDIP3Q9BY77 421 aaKnown RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 VCX3BQ9H321 246 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 TXNIPQ9H3M7 391 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 BCO1Q9HAY6 547 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 GP6Q9HCN6 339 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 NRIP3Q9NQ35 241 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 MED29Q9NX70 200 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 ZNF346Q9UL40 294 aaKnown RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 NOSIPQ9Y314 301 aaKnown RBP10.88□□□□□ -0.67
SDC1-206ENST00000482879 IER3IP1Q9Y5U9 82 aa10.88□□□□□ -0.67
SDC1-206ENST00000482879 A0A1B0GUH1 482 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 ZNF726A6NNF4 738 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 AKAP8O43823 692 aaKnown RBP10.87□□□□□ -0.67
SDC1-206ENST00000482879 SS18L1O75177 396 aaPredicted RBP10.87□□□□□ -0.67
SDC1-206ENST00000482879 SNAP29O95721 258 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 CRHP06850 196 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 AGTR1P30556 359 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 POLR2IP36954 125 aaKnown RBP10.87□□□□□ -0.67
SDC1-206ENST00000482879 GIPRP48546 466 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 DAP3P51398 398 aaKnown RBP10.87□□□□□ -0.67
SDC1-206ENST00000482879 RPS6KA3P51812 740 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 BIDP55957 195 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 RPL27P61353 136 aaKnown RBP10.87□□□□□ -0.67
SDC1-206ENST00000482879 SIRPAP78324 504 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 FOXF2Q12947 444 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 NPRL3Q12980 569 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 MELKQ14680 651 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 SNCBQ16143 134 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 NCCRP1Q6ZVX7 275 aaPredicted RBP10.87□□□□□ -0.67
SDC1-206ENST00000482879 AAED1Q7RTV5 226 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 NUFIP2Q7Z417 695 aaKnown RBP10.87□□□□□ -0.67
SDC1-206ENST00000482879 FJX1Q86VR8 437 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 IQCF1Q8N6M8 205 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 CNEP1R1Q8N9A8 125 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 OR2T33Q8NG76 320 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 OR4Q3Q8NH05 313 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 RND1Q92730 232 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 Q96M85 177 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 ZNF570Q96NI8 536 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 EMC6Q9BV81 110 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 GABARAPL3Q9BY60 117 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 RASSF4Q9H2L5 321 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 TOR3AQ9H497 397 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 PARPBPQ9NWS1 579 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 SMPD3Q9NY59 655 aaPredicted RBP10.87□□□□□ -0.67
SDC1-206ENST00000482879 GRHPRQ9UBQ7 328 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 BAIAP2Q9UQB8 552 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 EMC9Q9Y3B6 208 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 ADAM18Q9Y3Q7 739 aa10.87□□□□□ -0.67
SDC1-206ENST00000482879 SLC35F4A4IF30 521 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 NPIPB13A6NJU9 1138 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 HSPB2A8KAH6 182 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 NPIPB4C9JG80 1138 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 DLGAP1O14490 977 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 BHLHE40O14503 412 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 ARPC3O15145 178 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 LRRTM2O43300 516 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 IDH3BO43837 385 aa10.86□□□□□ -0.67
SDC1-206ENST00000482879 MRPL33O75394 65 aaKnown RBP10.86□□□□□ -0.67
SDC1-206ENST00000482879 IGHMP01871 453 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms