RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	SERINC2	Q96SA4	455 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	ABHD1	Q96SE0	405 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	NIPSNAP1	Q9BPW8	284 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	NRIP2	Q9BQI9	281 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	SLC25A21	Q9BQT8	299 aa	Predicted RBP	4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	SOX7	Q9BT81	388 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	PINK1	Q9BXM7	581 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	DPH1	Q9BZG8	443 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	CHIA	Q9BZP6	476 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	ACTR3C	Q9C0K3	210 aa	Predicted RBP	4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	POLR2J3	Q9H1A7	115 aa	Known RBP	4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	TLNRD1	Q9H1K6	362 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	OPN3	Q9H1Y3	402 aa	Predicted RBP	4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	CDT1	Q9H211	546 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	PRDM13	Q9H4Q3	707 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	CWH43	Q9H720	699 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	TPT1P8	Q9HAU6	139 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	RDH14	Q9HBH5	336 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	PTPRH	Q9HD43	1115 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	HRASLS	Q9HDD0	168 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	TREM1	Q9NP99	234 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	TRIM36	Q9NQ86	728 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	TLR8	Q9NR97	1041 aa	Known RBP	4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	GPR27	Q9NS67	375 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	MARCH5	Q9NX47	278 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	COX16	Q9P0S2	106 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	CFAP97	Q9P2B7	532 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	PISD	Q9UG56	409 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	CLEC2D	Q9UHP7	191 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	EIF2B4	Q9UI10	523 aa	Known RBP	4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	ZNF107	Q9UII5	783 aa	Predicted RBP	4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	SIX4	Q9UIU6	781 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	ZNF225	Q9UK10	706 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	FZD4	Q9ULV1	537 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	TNFSF18	Q9UNG2	199 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	SLC9A8	Q9Y2E8	581 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	RAI2	Q9Y5P3	530 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	SNX10	Q9Y5X0	201 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	FLVCR1	Q9Y5Y0	555 aa		4.31	□□□□□ -1.72
PTCD3-212	ENST00000477520	TRIOBP	Q9H2D6	2365 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	CCDC187	A0A096LP49	1063 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	TMEM269	A0A1B0GVZ9	245 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	CDHR4	A6H8M9	788 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	URAD	A6NGE7	173 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	GABRR3	A8MPY1	467 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	HEPACAM2	A8MVW5	462 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520		A8MWP6	167 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520		A8MXE2	369 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	ZNF587B	E7ETH6	402 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	RNASEK-C17orf49	H0YIS7	233 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	MANBA	O00462	879 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	RNASET2	O00584	256 aa	Known RBP	4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	PPP1R2P9	O14990	202 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	NPC1	O15118	1278 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	EMC8	O43402	210 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	RNF13	O43567	381 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	PLPP2	O43688	288 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	TSPAN3	O60637	253 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	AKR7A3	O95154	331 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	OPN1MW	P04001	364 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	EIF4E	P06730	217 aa	Known RBP	4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	QDPR	P09417	244 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	CSF1	P09603	554 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	OR5AC1	P0C628	307 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	OPN1MW2	P0DN77	364 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	OPN1MW3	P0DN78	364 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	PKM	P14618	531 aa	Known RBP	4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	TMEM11	P17152	192 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	POU3F2	P20265	443 aa	Predicted RBP	4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	MPZ	P25189	248 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	BDKRB2	P30411	391 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	ATP6V1E1	P36543	226 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	SERPINF1	P36955	418 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	GNAL	P38405	381 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	FEN1	P39748	380 aa	Known RBP	4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	OMP	P47874	163 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	CXCR3	P49682	368 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	IDH3G	P51553	393 aa	Predicted RBP	4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	CCR8	P51685	355 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	ZNF140	P52738	457 aa	Predicted RBP	4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	PNLIPRP1	P54315	467 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	OR10A3	P58181	314 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	KRTAP10-11	P60412	298 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	FAM189B	P81408	668 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	TWF1	Q12792	350 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	GPNMB	Q14956	572 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	SLC10A1	Q14973	349 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	TMEM132D	Q14C87	1099 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	ARHGAP19	Q14CB8	494 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	ABRAXAS2	Q15018	415 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	PCOLCE	Q15113	449 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	RSU1	Q15404	277 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	RGN	Q15493	299 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	SOWAHA	Q2M3V2	549 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	SYT14P1	Q58G82	188 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	PYY3	Q5JQD4	70 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	ENTPD8	Q5MY95	495 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	TANGO2	Q6ICL3	276 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	C11orf87	Q6NUJ2	197 aa		4.3	□□□□□ -1.72
PTCD3-212	ENST00000477520	ARMC6	Q6NXE6	501 aa		4.3	□□□□□ -1.72

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