RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C1orf140Q5VVS0 124 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 REEP3Q6NUK4 255 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 KLHL17Q6TDP4 642 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM108Q6UXF1 575 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 SERPINA11Q86U17 422 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 GPAT4Q86UL3 456 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 KRT73Q86Y46 540 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 LDLRAD3Q86YD5 345 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 FUNDC1Q8IVP5 155 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 C17orf78Q8N4C9 275 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 C1orf162Q8NEQ5 155 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 KBTBD8Q8NFY9 601 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 OR52E4Q8NGH9 312 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 OR52N5Q8NH56 324 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 LILRB1Q8NHL6 650 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 NFKBIDQ8NI38 313 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 SMAP2Q8WU79 429 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 CKAP2Q8WWK9 683 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 STON2Q8WXE9 905 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM45BQ96B21 275 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 TRMT61AQ96FX7 289 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 AJUBAQ96IF1 538 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 RADILQ96JH8 1075 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 MAGEB18Q96M61 343 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 SPATA5L1Q9BVQ7 753 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 SF3B5Q9BWJ5 86 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 PIF1Q9H611 641 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF701Q9NV72 531 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 ADPRHL2Q9NX46 363 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 VAPAQ9P0L0 249 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 UPB1Q9UBR1 384 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 RPS6KB2Q9UBS0 482 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 LAMP3Q9UQV4 416 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 GMEB1Q9Y692 573 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 TRBV5-3A0A0A0MS03 114 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 PRORSD1PA6NEY8 169 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 EVPLLA8MZ36 301 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 B2RBV5 119 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SHISA9B4DS77 424 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 H7C1Q1 480 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 ABCD4O14678 606 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 NPIPB7O75200 414 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 VAMP5O95183 116 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 AHSA1O95433 338 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 HEXAP06865 529 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 ITGA5P08648 1049 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 DANCRP0C864 163 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 H2AFXP16104 143 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 GPX2P18283 190 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC6A2P23975 617 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 PTAFRP25105 342 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 GTF2E2P29084 291 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 MPGP29372 298 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 CDH11P55287 796 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 ATP5J2P56134 94 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 NCALDP61601 193 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 HOXC5Q00444 222 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 CDK6Q00534 326 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SCARB2Q14108 478 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 ETFDHQ16134 617 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 KRTAP21-3Q3LHN1 58 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 PAGE3Q5JUK9 113 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 TMEM225Q6GV28 225 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 DHRS4L2Q6PKH6 230 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 C6orf89Q6UWU4 347 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 CLEC9AQ6UXN8 241 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 AAED1Q7RTV5 226 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 ABHD12BQ7Z5M8 362 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 MSRB3Q8IXL7 192 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 TMEM99Q8N816 258 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 POMGNT2Q8NAT1 580 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 OR9K2Q8NGE7 335 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 MFSD8Q8NHS3 518 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 C3orf49Q96BT1 292 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 MUS81Q96NY9 551 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF607Q96SK3 696 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SMR3AQ99954 134 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SIKE1Q9BRV8 207 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 TRIM2Q9C040 744 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 AMBRA1Q9C0C7 1298 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SLCO5A1Q9H2Y9 848 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 TMEM38AQ9H6F2 299 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 C12orf10Q9HB07 376 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC52A3Q9NQ40 469 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC7A10Q9NS82 523 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 FAIMQ9NVQ4 179 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 NPAP1Q9NZP6 1156 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 LEF1Q9UJU2 399 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 MGAT4BQ9UQ53 548 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 ANGPT4Q9Y264 503 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 RASD1Q9Y272 281 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 AMDHD2Q9Y303 409 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 CHST2Q9Y4C5 530 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 MAGED1Q9Y5V3 778 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC25A15Q9Y619 301 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 NAV3Q8IVL0 2385 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 NIPBLQ6KC79 2804 aaeCLIP5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 CR1P17927 2039 aa5.96□□□□□ -1.46
CCDC88A-213ENST00000476903 A0A1W2PR80 420 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms