RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZNF224Q9NZL3 707 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 FKBP7Q9Y680 259 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 HMGB1P1B2RPK0 211 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 LILRA1O75019 489 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MFN2O95140 757 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 STAMBPO95630 424 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TACSTD2P09758 323 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF35P13682 527 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF23P17027 643 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PPIBP23284 216 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 RIN1Q13671 783 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MFSD13AQ14CX5 517 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 OR1Q1Q15612 314 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MSMPQ1L6U9 139 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 KRTAP24-1Q3LI83 254 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ALG10BQ5I7T1 473 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 GCNT6Q5T4J0 391 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 FAM166AQ6J272 317 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SCAIQ8N9R8 606 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF540Q8NDQ6 660 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PIK3C3Q8NEB9 887 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLC47A1Q96FL8 570 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 C1orf159Q96HA4 380 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TXNDC15Q96J42 360 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 VRK1Q99986 396 aaPredicted RBP10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 KCNS3Q9BQ31 491 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 REPIN1Q9BWE0 567 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 BPESC1Q9GZL8 116 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CACYBPQ9HB71 228 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLCO1B3Q9NPD5 702 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MRPL39Q9NYK5 338 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TESQ9UGI8 421 aaKnown RBP10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CORINQ9Y5Q5 1042 aa10.59□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 C5orf58C9J3I9 102 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 hCG_2039718K7EN88 272 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF14P17017 642 aaPredicted RBP10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 NPR2P20594 1047 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 NR4A1P22736 598 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 EVX1P49640 407 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ATP4BP51164 291 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PCBP3P57721 371 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 C1DQ13901 141 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GGTLC2Q14390 218 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RUNDC3AQ59EK9 446 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 FAM120AOSQ5T036 256 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SLC46A3Q7Z3Q1 461 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 MDP1Q86V88 176 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZCCHC24Q8N2G6 241 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF786Q8N393 782 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GPR137CQ8N3F9 429 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 BHLHE22Q8NFJ8 381 aaPredicted RBP10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 NEU4Q8WWR8 484 aaPredicted RBP10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ANKRD27Q96NW4 1050 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 MOGAT1Q96PD6 335 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TMEM43Q9BTV4 400 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SPATA5L1Q9BVQ7 753 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SHARPINQ9H0F6 387 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RAB1BQ9H0U4 201 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 EVA1AQ9H8M9 152 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 NOX3Q9HBY0 568 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CCDC167Q9P0B6 97 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RPS6KB2Q9UBS0 482 aa10.58□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 LOC100289279A0A1B0GTE1 492 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PLPP3O14495 311 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 FMO6PO60774 539 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 LYPD3O95274 346 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 APEHP13798 732 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SLC6A2P23975 617 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GTF2E2P29084 291 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CDH12P55289 794 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SCARB2Q14108 478 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 DUSP7Q16829 419 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SWT1Q5T5J6 900 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 VHLLQ6RSH7 139 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PXKQ7Z7A4 578 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 KRT73Q86Y46 540 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PTOV1Q86YD1 416 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 UEVLDQ8IX04 471 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 DPP10Q8N608 796 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 STON2Q8WXE9 905 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CPPED1Q9BRF8 314 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 EMC6Q9BV81 110 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 DENND2DQ9H6A0 471 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 MED29Q9NX70 200 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 KCNS2Q9ULS6 477 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 USP22Q9UPT9 525 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 NOX1Q9Y5S8 564 aa10.57□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PRORSD1PA6NEY8 169 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 LRRN3E7EW58 273 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 M0R3G1 203 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 POLR3GO15318 223 aaPredicted RBP10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 AKAP8O43823 692 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SEC14L2O76054 403 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 HLA-HP01893 362 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 THY1P04216 161 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 C8BP07358 591 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 DAOP14920 347 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CBLP22681 906 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 IL2RGP31785 369 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 STX1BP61266 288 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms