RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, human

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-215	ENST00000474539	SLC25A31	Q9H0C2	315 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	HSD3B7	Q9H2F3	369 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	ELOVL5	Q9NYP7	299 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	OR5V1	Q9UGF6	321 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	ZNF222	Q9UK12	451 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	NUP50	Q9UKX7	468 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	RNF150	Q9ULK6	438 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	IER3IP1	Q9Y5U9	82 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	ETV7	Q9Y603	341 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539	KCNMB2	Q9Y691	235 aa		4.25	□□□□□ -1.73
CCNL1-215	ENST00000474539		E9PI62	339 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539		F5H5K5	113 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TERT	O14746	1132 aa	Known RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	NDUFB3	O43676	98 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	SLC16A7	O60669	478 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	PRH1	P02810	166 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	RAF1	P04049	648 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ATP1B1	P05026	303 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	FCER2	P06734	321 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	NCK1	P16333	377 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ARNT	P27540	789 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	CCR2	P41597	374 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ZFP36L2	P47974	494 aa	Known RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	WDR4	P57081	412 aa	Known RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	P2RY6	Q15077	328 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TCTN1	Q2MV58	587 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	C4orf46	Q504U0	113 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	FBXO48	Q5FWF7	155 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ENTPD8	Q5MY95	495 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TMEM69	Q5SWH9	247 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539		Q7L0L9	218 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TMEM200A	Q86VY9	491 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	PGBD5	Q8N414	524 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	LSM14A	Q8ND56	463 aa	Known RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TMEM163	Q8TC26	289 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ATG5	Q9H1Y0	275 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	CTPS2	Q9NRF8	586 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ZNF701	Q9NV72	531 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	SLC17A6	Q9P2U8	582 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	SH2B3	Q9UQQ2	575 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TRAPPC4	Q9Y296	219 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TMEM269	A0A1B0GVZ9	245 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ARRDC5	A6NEK1	342 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	FAM166B	A8MTA8	275 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ACOT8	O14734	319 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	NXPH2	O95156	264 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TFPT	P0C1Z6	253 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	SLC2A2	P11168	524 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	CD36	P16671	472 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ZNF16	P17020	682 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	RAB3B	P20337	219 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	C21orf33	P30042	268 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ADH7	P40394	386 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ALDH3B1	P43353	468 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	GABRA2	P47869	451 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	SH3BP2	P78314	561 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	MXD1	Q05195	221 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	CEACAM7	Q14002	265 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	RTL8B	Q17RB0	113 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	COL28A1	Q2UY09	1125 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	PROX2	Q3B8N5	592 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	OTUD1	Q5VV17	481 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	SMIM15	Q7Z3B0	74 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ANKRD37	Q7Z713	158 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ZNF441	Q8N8Z8	693 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	OR51D1	Q8NGF3	324 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	FBXO27	Q8NI29	283 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	RASD2	Q96D21	266 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	OR52D1	Q9H346	318 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	CXorf21	Q9HAI6	301 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	RAB18	Q9NP72	206 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	DCAF13	Q9NV06	445 aa	Known RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TRPM7	Q96QT4	1865 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	C17orf112	F2Z3M2	114 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	PSMD9	O00233	223 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ITM2A	O43736	263 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	KLK8	O60259	260 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	DOK2	O60496	412 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	PPP1R3D	O95685	299 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	AKR1C4	P17516	323 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	FABP6	P51161	128 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	DSCR9	P59020	149 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	TAS2R20	P59543	309 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	GPR50	Q13585	617 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	EXOSC7	Q15024	291 aa	Known RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	RSPO4	Q2I0M5	234 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	RINL	Q6ZS11	566 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	PRR22	Q8IZ63	422 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	ISOC1	Q96CN7	298 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	MBOAT4	Q96T53	435 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	BCO1	Q9HAY6	547 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	GAR1	Q9NY12	217 aa	Known RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	B3GNT2	Q9NY97	397 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	GMPR2	Q9P2T1	348 aa	Known RBP	4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	SLC23A1	Q9UHI7	598 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	RCE1	Q9Y256	329 aa		4.24	□□□□□ -1.73
CCNL1-215	ENST00000474539	GPR52	Q9Y2T5	361 aa		4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms