RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 CDK6Q00534 326 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 LGALS3BPQ08380 585 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 IQCCQ4KMZ1 466 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 GCNT6Q5T4J0 391 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 REP15Q6BDI9 236 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 UEVLDQ8IX04 471 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 KDM8Q8N371 416 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 ZNF417Q8TAU3 575 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 MAL2Q969L2 176 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 ZNF587Q96SQ5 575 aaPredicted RBP11.72□□□□□ -0.53
CHD3-209ENST00000473376 ASPNQ9BXN1 380 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 BPESC1Q9GZL8 116 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 MS4A5Q9H3V2 200 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 TMEM27Q9HBJ8 222 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 TCF7L2Q9NQB0 619 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 SLC25A37Q9NYZ2 338 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 TRBV5-3A0A0A0MS03 114 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 A0A0B4J2E0 115 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 A0A1B0GX12 115 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 MS4A18H0YCH9 400 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 TGFAP01135 160 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 VIMP08670 466 aaKnown RBP11.71□□□□□ -0.53
CHD3-209ENST00000473376 DAOP14920 347 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 SLC6A2P23975 617 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 HTR2AP28223 471 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 THBS4P35443 961 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 GLRXP35754 106 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 ATP4BP51164 291 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 NCALDP61601 193 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 RPS23P62266 143 aaKnown RBP11.71□□□□□ -0.53
CHD3-209ENST00000473376 RIN1Q13671 783 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 DAG1Q14118 895 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 MS4A18Q3C1V0 323 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 LIPNQ5VXI9 398 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 ZNF613Q6PF04 617 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 SLC2A7Q6PXP3 512 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 DPPA2Q7Z7J5 298 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 SPDL1Q96EA4 605 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 ZNF75AQ96N20 296 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 RABEP2Q9H5N1 569 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 TMBIM4Q9HC24 238 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 SLC52A3Q9NQ40 469 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 CMAHPQ9Y471 501 aa11.71□□□□□ -0.53
CHD3-209ENST00000473376 CUBNO60494 3623 aa11.71□□□□□ -0.54
CHD3-209ENST00000473376 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.7□□□□□ -0.54
CHD3-209ENST00000473376 SLC35F4A4IF30 521 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 EVPLLA8MZ36 301 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 POLR3GO15318 223 aaPredicted RBP11.7□□□□□ -0.54
CHD3-209ENST00000473376 SYNGR3O43761 229 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 LILRA1O75019 489 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 ERLIN1O75477 346 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 BGLAPP02818 100 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 ZNF35P13682 527 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 HOXC5Q00444 222 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 PUDPQ08623 228 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 RBBP4Q09028 425 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 GSG1Q2KHT4 349 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 KRTAP24-1Q3LI83 254 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 MMEL1Q495T6 779 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 NRN1LQ496H8 165 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 LINC00114Q6XXX2 140 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 PIWIL3Q7Z3Z3 882 aaKnown RBP11.7□□□□□ -0.54
CHD3-209ENST00000473376 MDP1Q86V88 176 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 RANBP3LQ86VV4 465 aaPredicted RBP11.7□□□□□ -0.54
CHD3-209ENST00000473376 FUNDC1Q8IVP5 155 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 MSRB3Q8IXL7 192 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 RFLNBQ8N5W9 214 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 ANKS4BQ8N8V4 417 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 LINC01356Q8N9X3 169 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 HIPK4Q8NE63 616 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 MGARPQ8TDB4 240 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 UBASH3BQ8TF42 649 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 MRPL24Q96A35 216 aaKnown RBP11.7□□□□□ -0.54
CHD3-209ENST00000473376 RSPO3Q9BXY4 272 aaPredicted RBP11.7□□□□□ -0.54
CHD3-209ENST00000473376 NOX3Q9HBY0 568 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 VAPAQ9P0L0 249 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 SLC13A4Q9UKG4 626 aa11.7□□□□□ -0.54
CHD3-209ENST00000473376 ZNF726A6NNF4 738 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 NQO1P15559 274 aaKnown RBP11.69□□□□□ -0.54
CHD3-209ENST00000473376 ZNF14P17017 642 aaPredicted RBP11.69□□□□□ -0.54
CHD3-209ENST00000473376 TUBA1BP68363 451 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 TUBA4AP68366 448 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 ZP4Q12836 540 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 SCARB2Q14108 478 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 OR1Q1Q15612 314 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 ADRM1Q16186 407 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 VHLLQ6RSH7 139 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 TUBA1AQ71U36 451 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 SPATA21Q7Z572 469 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 SLC30A8Q8IWU4 369 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 OR6X1Q8NH79 312 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 NFKBIDQ8NI38 313 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 TSPEARQ8WU66 669 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 CKAP2Q8WWK9 683 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 ZNF837Q96EG3 531 aaPredicted RBP11.69□□□□□ -0.54
CHD3-209ENST00000473376 SLC19A3Q9BZV2 496 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 SEC14L4Q9UDX3 406 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 POFUT2Q9Y2G5 429 aa11.69□□□□□ -0.54
CHD3-209ENST00000473376 A0A0A6YYJ9 748 aa11.68□□□□□ -0.54
CHD3-209ENST00000473376 SLC22A23A1A5C7 686 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms