RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TPST1O60507 370 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 SEC14L2O76054 403 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 NPR2P20594 1047 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 SLC6A2P23975 617 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 IGFBP5P24593 272 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 IDH3AP50213 366 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 HGFACQ04756 655 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 GLIPR1L2Q4G1C9 344 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 PAGE3Q5JUK9 113 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 CARD17Q5XLA6 110 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 MDP1Q86V88 176 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 C10orf111Q8N326 155 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 ZNF540Q8NDQ6 660 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 BHLHE22Q8NFJ8 381 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-210ENST00000472880 ZNF837Q96EG3 531 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-210ENST00000472880 ANKRD27Q96NW4 1050 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 EBF4Q9BQW3 602 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 CCDC28BQ9BUN5 200 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 PRR14Q9BWN1 585 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 RSPO3Q9BXY4 272 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-210ENST00000472880 TMEM38AQ9H6F2 299 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 SLCO1B3Q9NPD5 702 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 INTS9Q9NV88 658 aaKnown RBP17.13■□□□□ 0.33
COL9A3-210ENST00000472880 A0A087WUJ7 227 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 IGHV2OR16-5A0A0B4J2B6 119 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 IGHV4-61A0A0C4DH41 118 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 EVPLLA8MZ36 301 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 SERPINB7O75635 380 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 SRD5A1P18405 259 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 AQP1P29972 269 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 THBS4P35443 961 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 POU3F1Q03052 451 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-210ENST00000472880 SPATA21Q7Z572 469 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 RANBP3LQ86VV4 465 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-210ENST00000472880 SVOPLQ8N434 492 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 ARIH2OSQ8N7S6 290 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 SCAIQ8N9R8 606 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 OR6S1Q8NH40 331 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 BPESC1Q9GZL8 116 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 DYNLRB1Q9NP97 96 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 B3GAT2Q9NPZ5 323 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 GMEB1Q9Y692 573 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 CUBNO60494 3623 aa17.12■□□□□ 0.33
COL9A3-210ENST00000472880 TRBV5-3A0A0A0MS03 114 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 A0A0B4J2E0 115 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 A0A1B0GX12 115 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 ZNF503-AS2A6NEH8 195 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 HNF1AP20823 631 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 SNTB2Q13425 540 aaKnown RBP17.11■□□□□ 0.33
COL9A3-210ENST00000472880 OR1Q1Q15612 314 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 AGKQ53H12 422 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 ARMC8Q8IUR7 673 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 C20orf196Q8IYI0 205 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 C10orf53Q8N6V4 93 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 IL17RDQ8NFM7 739 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 MSI2Q96DH6 328 aaKnown RBP17.11■□□□□ 0.33
COL9A3-210ENST00000472880 SLC41A3Q96GZ6 507 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 EMC6Q9BV81 110 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 IKZF5Q9H5V7 419 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 EVA1AQ9H8M9 152 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 ANGPT4Q9Y264 503 aa17.11■□□□□ 0.33
COL9A3-210ENST00000472880 MS4A18H0YCH9 400 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 HPRP00739 348 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 BGLAPP02818 100 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 HLA-DOBP13765 273 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 ZNF23P17027 643 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 GPX2P18283 190 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 ATP4BP51164 291 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 AQP5P55064 265 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 PUDPQ08623 228 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 PMS2P3Q13401 168 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 DAG1Q14118 895 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 SQLEQ14534 574 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 MS4A18Q3C1V0 323 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 PHYHD1Q5SRE7 291 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 SWT1Q5T5J6 900 aaKnown RBP17.1■□□□□ 0.33
COL9A3-210ENST00000472880 KRT80Q6KB66 452 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 IL17RELQ6ZVW7 336 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 SNX32Q86XE0 403 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 HIPK4Q8NE63 616 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 NEU4Q8WWR8 484 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-210ENST00000472880 NOX3Q9HBY0 568 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 SLC52A3Q9NQ40 469 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 MED29Q9NX70 200 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 NOX1Q9Y5S8 564 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 STAB1Q9NY15 2570 aa17.1■□□□□ 0.33
COL9A3-210ENST00000472880 SLC35F4A4IF30 521 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 STAMBPO95630 424 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 HLA-HP01893 362 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 CD79AP11912 226 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 DAOP14920 347 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 GSG1Q2KHT4 349 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 FAM120AOSQ5T036 256 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 ZNF813Q6ZN06 617 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 OR6N1Q8NGY5 312 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 CKAP2Q8WWK9 683 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 LRR1Q96L50 414 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 MOGAT1Q96PD6 335 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 DOK1Q99704 481 aa17.09■□□□□ 0.33
COL9A3-210ENST00000472880 CPPED1Q9BRF8 314 aaPredicted RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms