RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 UPK3AO75631 287 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 BCKDHBP21953 392 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 CSF2RBP32927 897 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 TDGQ13569 410 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 COL13A1Q5TAT6 717 aaPredicted RBP17.32■□□□□ 0.36
VIM-203ENST00000469543 FAAP20Q6NZ36 180 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 C17orf82Q86X59 251 aaPredicted RBP17.32■□□□□ 0.36
VIM-203ENST00000469543 TDHQ8IZJ6 230 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 EXD3Q8N9H8 876 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 CREB3L1Q96BA8 519 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 PHF21AQ96BD5 680 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 ZDHHC12Q96GR4 267 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 OR11A1Q9GZK7 315 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 SLC2A4RGQ9NR83 387 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 CTSFQ9UBX1 484 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 FREM3P0C091 2139 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 PNMTP11086 282 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 UQCRC1P31930 480 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 YIF1BQ5BJH7 314 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 FAM199XQ6PEV8 388 aaPredicted RBP17.32■□□□□ 0.36
VIM-203ENST00000469543 SLC25A45Q8N413 288 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 ZNF578Q96N58 590 aaPredicted RBP17.32■□□□□ 0.36
VIM-203ENST00000469543 ZNF281Q9Y2X9 895 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 IGHV1OR21-1A0A087WYE8 117 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 IGKV3D-11A0A0A0MRZ8 115 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 DOK2O60496 412 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 CDC40O60508 579 aaKnown RBP eCLIP17.31■□□□□ 0.36
VIM-203ENST00000469543 TCRBP04435 133 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 FCER2P06734 321 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 TMIGD3P0DMS9 266 aaPredicted RBP17.31■□□□□ 0.36
VIM-203ENST00000469543 ADRA2CP18825 462 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 CENPAP49450 140 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 EBPQ15125 230 aaKnown RBP17.31■□□□□ 0.36
VIM-203ENST00000469543 LAMTOR1Q6IAA8 161 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 NANOGNBQ7Z5D8 188 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 TIGD4Q8IY51 512 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 OR11H7Q8NGC8 314 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 HAVCR2Q8TDQ0 301 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 SLC46A1Q96NT5 459 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 ZCCHC4Q9H5U6 513 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 TAS2R5Q9NYW4 299 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 FLVCR2Q9UPI3 526 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 PCDHGA9Q9Y5G4 932 aaKnown RBP17.31■□□□□ 0.36
VIM-203ENST00000469543 IFITM5A6NNB3 132 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 FABP7O15540 132 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 NDUFB5O43674 189 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 GMDSO60547 372 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 UBL3O95164 117 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 MAS1P04201 325 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 GZMKP49863 264 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 HSD11B2P80365 405 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 LINGO2Q7L985 606 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 TCTE3Q8IZS6 198 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 SLC25A38Q96DW6 304 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 GPX7Q96SL4 187 aaPredicted RBP17.31■□□□□ 0.36
VIM-203ENST00000469543 DPYSL5Q9BPU6 564 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 CACNG6Q9BXT2 260 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 SLC19A3Q9BZV2 496 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 SPATA2Q9UM82 520 aa17.31■□□□□ 0.36
VIM-203ENST00000469543 PRKCAP17252 672 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 IL12BP29460 328 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 HNRNPKP61978 463 aaKnown RBP eCLIP17.3■□□□□ 0.36
VIM-203ENST00000469543 UNQ9370/PRO34162Q6UXP9 181 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 AKAP1Q92667 903 aaKnown RBP eCLIP17.3■□□□□ 0.36
VIM-203ENST00000469543 KCNG2Q9UJ96 466 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 TRAV8-7A0A075B6U6 113 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 TRABD2BA6NFA1 517 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 ZNF354AO60765 605 aaPredicted RBP17.3■□□□□ 0.36
VIM-203ENST00000469543 CXCR1P25024 350 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 ABCD3P28288 659 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 SLC35F3Q8IY50 421 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 OR7G1Q8NGA0 311 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 NUDT22Q9BRQ3 303 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 DUSP15Q9H1R2 295 aaPredicted RBP17.3■□□□□ 0.36
VIM-203ENST00000469543 ING3Q9NXR8 418 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 TEKT2Q9UIF3 430 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 ITGB1BP2Q9UKP3 347 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 HSPB11Q9Y547 144 aa17.3■□□□□ 0.36
VIM-203ENST00000469543 ADH7P40394 386 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 MMP15P51511 669 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 NXPH1P58417 271 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 COL19A1Q14993 1142 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 MEP1BQ16820 701 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 HYAL4Q2M3T9 481 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 BTBD16Q32M84 506 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 CCDC58Q4VC31 144 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 SLC35D3Q5M8T2 416 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 TMPRSS9Q7Z410 1059 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 LILRB4Q8NHJ6 448 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 C1orf216Q8TAB5 229 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 ADAMTS18Q8TE60 1221 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 DUSP19Q8WTR2 217 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 VN1R1Q9GZP7 353 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 ADAM19Q9H013 955 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 EVA1AQ9H8M9 152 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 ABRACLQ9P1F3 81 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 LAMP5Q9UJQ1 280 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 RTTNQ86VV8 2226 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 BLACEA4D250 179 aa17.29■□□□□ 0.36
VIM-203ENST00000469543 PIAS2O75928 621 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms