RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MAP6Q96JE9 813 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 OR1F2PQ96R84 312 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 MFRPQ9BY79 579 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 FOXQ1Q9C009 403 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 LAT2Q9GZY6 243 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 RAB33BQ9H082 229 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 AUNIPQ9H7T9 357 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 WDR76Q9H967 626 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 FRRS1LQ9P0K9 344 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 CAMK2AQ9UQM7 478 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 CEP192Q8TEP8 1941 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 IGHV1OR21-1A0A087WYE8 117 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 IFITM5A6NNB3 132 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 H3BSH0 61 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 NUDT14O95848 222 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 C1QBP02746 253 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 TCRBP04435 133 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 IL12BP29460 328 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 ERP29P30040 261 aaKnown RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 CCR6P51684 374 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 NXPH1P58417 271 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 PITPNAQ00169 270 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 EBPQ15125 230 aaKnown RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 ELAVL1Q15717 326 aaKnown RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 FAM205BPQ63HN1 556 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 FAM199XQ6PEV8 388 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 SERPINA12Q8IW75 414 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 LILRB4Q8NHJ6 448 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 PHF7Q9BWX1 381 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 SYT4Q9H2B2 425 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 DPAGT1Q9H3H5 408 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 ING1Q9UK53 422 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 MRTO4Q9UKD2 239 aaKnown RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 MOKQ9UQ07 419 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 SLC6A5Q9Y345 797 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 TCRBV16S1A1N1A0A5B0 115 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 C11orf98E9PRG8 122 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 ARHGEF9O43307 516 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 AKR7A2O43488 359 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 NDUFB5O43674 189 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SCO2O43819 266 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 PIAS2O75928 621 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 AKR7A3O95154 331 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 TXNDC12O95881 172 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 MT-ND4P03905 459 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 HIST1H2ABP04908 130 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 PRKCAP17252 672 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 CXCR1P25024 350 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SOX2P48431 317 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 MAB21L1Q13394 359 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 FCN2Q15485 313 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 UBE2NLQ5JXB2 153 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 HACD4Q5VWC8 232 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 FCRLAQ7L513 359 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 HIST3H2AQ7L7L0 130 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 DPY19L4Q7Z388 723 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 CDC20BQ86Y33 519 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 LIX1LQ8IVB5 337 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 PM20D2Q8IYS1 436 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 OR6N2Q8NGY6 317 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 C1orf216Q8TAB5 229 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 ZFAND1Q8TCF1 268 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 PHYHIPQ92561 330 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 HIST1H2ACQ93077 130 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SLC25A36Q96CQ1 311 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 CACNG6Q9BXT2 260 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 LIN7BQ9HAP6 207 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF304Q9HCX3 659 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 MRPL15Q9P015 296 aaKnown RBP8.11□□□□□ -1.11
SYNE1-217ENST00000466159 IKZF2Q9UKS7 526 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 ARID1BQ8NFD5 2236 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-217ENST00000466159 TRABD2BA6NFA1 517 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 AIPO00170 330 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 TSPAN2O60636 221 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 ABHD16AO95870 558 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 DHFRP00374 187 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 PLGP00747 810 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-217ENST00000466159 TACSTD2P09758 323 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 FBLP22087 321 aaKnown RBP8.11□□□□□ -1.11
SYNE1-217ENST00000466159 DPP4P27487 766 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 CSF2RBP32927 897 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 EPHA4P54764 986 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SNRPD2P62316 118 aaKnown RBP8.11□□□□□ -1.11
SYNE1-217ENST00000466159 MRPL28Q13084 256 aaKnown RBP8.11□□□□□ -1.11
SYNE1-217ENST00000466159 ALKBH1Q13686 389 aaKnown RBP8.11□□□□□ -1.11
SYNE1-217ENST00000466159 ODF4Q2M2E3 257 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 HLA-DQA1Q5Y7H0 255 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SLC6A19Q695T7 634 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SHISA6Q6ZSJ9 500 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 KANSL1Q7Z3B3 1105 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 FAM220AQ7Z4H9 259 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 CADM4Q8NFZ8 388 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 OR2T4Q8NH00 348 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 OR5AK2Q8NH90 309 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SLC25A38Q96DW6 304 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 MVB12AQ96EY5 273 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SCMH1Q96GD3 660 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 FOXN4Q96NZ1 517 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 TTYH1Q9H313 450 aaPredicted RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms