RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 C20orf196Q8IYI0 205 aa12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 DPP10Q8N608 796 aa12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 C11orf65Q8NCR3 313 aa12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 DYDC1Q8WWB3 177 aa12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 SORCS2Q96PQ0 1159 aa12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 ASPNQ9BXN1 380 aa12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 MRPL39Q9NYK5 338 aaKnown RBP12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 LEF1Q9UJU2 399 aaPredicted RBP12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 ANGPT4Q9Y264 503 aa12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 NOX1Q9Y5S8 564 aa12.47□□□□□ -0.41
SNRNP40-203ENST00000463988 LOC390937A0A1W2PQ73 354 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 LY6HO94772 140 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 HPRP00739 348 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 C8BP07358 591 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 FAM157CP0CG43 387 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 AQP1P29972 269 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 GZMKP49863 264 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 CDH12P55289 794 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 LSM11P83369 360 aaKnown RBP eCLIP12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 IL1RL1Q01638 556 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 HGFACQ04756 655 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 PUDPQ08623 228 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 TTMPQ5BVD1 217 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 ZNF613Q6PF04 617 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 SLC46A3Q7Z3Q1 461 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 PXKQ7Z7A4 578 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 SNX32Q86XE0 403 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 TSPEARQ8WU66 669 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 ZNF837Q96EG3 531 aaPredicted RBP12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 ANKRD27Q96NW4 1050 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 PIMREGQ9BSJ6 248 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 B3GAT2Q9NPZ5 323 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 INTS9Q9NV88 658 aaKnown RBP12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 LPAR3Q9UBY5 353 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 USP22Q9UPT9 525 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 NDUFAF1Q9Y375 327 aa12.46□□□□□ -0.41
SNRNP40-203ENST00000463988 IGHV2OR16-5A0A0B4J2B6 119 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 HMGB1P1B2RPK0 211 aaPredicted RBP12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 MT-ATP6P00846 226 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 IGHV4-31P0DP07 118 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 NPR2P20594 1047 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 CBLP22681 906 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 NR4A2P43354 598 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 IDH3GP51553 393 aaPredicted RBP12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 PMS2P3Q13401 168 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 LINC00114Q6XXX2 140 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 DHDDSQ86SQ9 333 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 PTOV1Q86YD1 416 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 SLC30A8Q8IWU4 369 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 ZNF540Q8NDQ6 660 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 RNF217Q8TC41 542 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 CKAP2Q8WWK9 683 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 MOGAT1Q96PD6 335 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 KCNK17Q96T54 332 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 CGREF1Q99674 301 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 MCHR1Q99705 422 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 ARHGDIGQ99819 225 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 VRK1Q99986 396 aaPredicted RBP12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 WFDC6Q9BQY6 131 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 RAB1BQ9H0U4 201 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 ZNF385DQ9H6B1 395 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 SEC61A2Q9H9S3 476 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 B3GNT2Q9NY97 397 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 TRIM33Q9UPN9 1127 aa12.45□□□□□ -0.42
SNRNP40-203ENST00000463988 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.45□□□□□ -0.421e-5■■■■□ 21.5
SNRNP40-203ENST00000463988 SLC35F4A4IF30 521 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 ZNF503-AS2A6NEH8 195 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 ZNF726A6NNF4 738 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 M0QX08 132 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 M0R3G1 203 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 PLPP3O14495 311 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 ANGPT2O15123 496 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 CELA3BP08861 270 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 HLA-DOBP13765 273 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 THBS4P35443 961 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 POU3F1Q03052 451 aaPredicted RBP12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 DUSP7Q16829 419 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 CYP51A1Q16850 503 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 PHYHD1Q5SRE7 291 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 VHLLQ6RSH7 139 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 PATL1Q86TB9 770 aaKnown RBP12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 MDP1Q86V88 176 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 MYPOPQ86VE0 399 aaPredicted RBP12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 SMYD1Q8NB12 490 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 MAGEB18Q96M61 343 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 FOXN4Q96NZ1 517 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 DOK1Q99704 481 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 SIKE1Q9BRV8 207 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 BEX2Q9BXY8 128 aa12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 DENND2DQ9H6A0 471 aaPredicted RBP12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 KAT8Q9H7Z6 458 aaKnown RBP12.44□□□□□ -0.42
SNRNP40-203ENST00000463988 MALRD1Q5VYJ5 2156 aa12.43□□□□□ -0.42
SNRNP40-203ENST00000463988 hCG_2039718K7EN88 272 aa12.43□□□□□ -0.42
SNRNP40-203ENST00000463988 CHP2O43745 196 aa12.43□□□□□ -0.42
SNRNP40-203ENST00000463988 ERCC1P07992 297 aaPredicted RBP12.43□□□□□ -0.42
SNRNP40-203ENST00000463988 NR4A1P22736 598 aa12.43□□□□□ -0.42
SNRNP40-203ENST00000463988 THBS2P35442 1172 aa12.43□□□□□ -0.42
SNRNP40-203ENST00000463988 NPRL3Q12980 569 aa12.43□□□□□ -0.42
SNRNP40-203ENST00000463988 METTL21CQ5VZV1 264 aa12.43□□□□□ -0.42
SNRNP40-203ENST00000463988 CARD17Q5XLA6 110 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms