RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ZNF43	P17038	809 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	COL8A2	P25067	703 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	COPZ1	P61923	177 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	IL1RL1	Q01638	556 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	NPRL3	Q12980	569 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	DAG1	Q14118	895 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	MS4A18	Q3C1V0	323 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	PDCD4	Q53EL6	469 aa	Known RBP	9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	ATG16L1	Q676U5	607 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	RINL	Q6ZS11	566 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	C1orf229	Q6ZS94	237 aa	Predicted RBP	9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	MAVS	Q7Z434	540 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	LRP11	Q86VZ4	500 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	C20orf196	Q8IYI0	205 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	C10orf111	Q8N326	155 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	LSMEM1	Q8N8F7	131 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	GLB1L3	Q8NCI6	653 aa	Predicted RBP	9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	ADPRHL1	Q8NDY3	354 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	YIPF5	Q969M3	257 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	SLC25A36	Q96CQ1	311 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	CALML5	Q9NZT1	146 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	KLHL14	Q9P2G3	628 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815	PCDHB14	Q9Y5E9	798 aa		9.59	□□□□□ -0.87
PTPN7-204	ENST00000462815		A0A0A6YYJ9	748 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815		B4DSR2	109 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	SLCO1B7	G3V0H7	640 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	AIM2	O14862	343 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	SYNGR3	O43761	229 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	IL6	P05231	212 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	NCF2	P19878	526 aa	Predicted RBP	9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	GRPR	P30550	384 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	SRP14	P37108	136 aa	Known RBP	9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	CRAT	P43155	626 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	LMO4	P61968	165 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	STX3	Q13277	289 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	LARS2	Q15031	903 aa	Known RBP	9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	FAM69A	Q5T7M9	428 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	C12orf54	Q6X4T0	127 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	ZNF584	Q8IVC4	421 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	CCDC36	Q8IYA8	594 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	KIRREL3	Q8IZU9	778 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	GPR137C	Q8N3F9	429 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	PIK3C3	Q8NEB9	887 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	IL17RD	Q8NFM7	739 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	MAL2	Q969L2	176 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	WFDC6	Q9BQY6	131 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	PAIP1	Q9H074	479 aa	Known RBP	9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	DYNLRB1	Q9NP97	96 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	A4GALT	Q9NPC4	353 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	SDR39U1	Q9NRG7	319 aa	Predicted RBP	9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	USP22	Q9UPT9	525 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	IFT52	Q9Y366	437 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815	CMAHP	Q9Y471	501 aa		9.58	□□□□□ -0.88
PTPN7-204	ENST00000462815		A0A1B0GWA3	101 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815		M0R3G1	203 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	HDAC3	O15379	428 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	SPRY1	O43609	319 aa	Predicted RBP	9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	TPST2	O60704	377 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	AVP	P01185	164 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	BGLAP	P02818	100 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	ERCC1	P07992	297 aa	Predicted RBP	9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	EGR1	P18146	543 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	ACHE	P22303	614 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	GLRX	P35754	106 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	ALDH3B1	P43353	468 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	ARFIP2	P53365	341 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	SEC24C	P53992	1094 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	MAD2L1BP	Q15013	274 aa	Predicted RBP	9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	RGN	Q15493	299 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	GLIPR1L2	Q4G1C9	344 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	SLC9B1	Q4ZJI4	515 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	ZNF311	Q5JNZ3	666 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	UGT2A3	Q6UWM9	527 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	MSANTD1	Q6ZTZ1	278 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	H1FNT	Q75WM6	255 aa	Predicted RBP	9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	GLCCI1	Q86VQ1	547 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	MSRB3	Q8IXL7	192 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	ANKRD42	Q8N9B4	389 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	OR9I1	Q8NGQ6	314 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	OR6S1	Q8NH40	331 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	FGFBP3	Q8TAT2	258 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	GTF2H4	Q92759	462 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	TMEM186	Q96B77	213 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	TXNDC15	Q96J42	360 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	LRR1	Q96L50	414 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	EMC6	Q9BV81	110 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	METTL17	Q9H7H0	456 aa	Predicted RBP	9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	G6PC2	Q9NQR9	355 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	ZNF275	Q9NSD4	429 aa	Predicted RBP	9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	HIF1AN	Q9NWT6	349 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	REV1	Q9UBZ9	1251 aa		9.57	□□□□□ -0.88
PTPN7-204	ENST00000462815	TRAV36DV7	A0A075B6V5	113 aa		9.56	□□□□□ -0.88
PTPN7-204	ENST00000462815		A0A087WUJ7	227 aa		9.56	□□□□□ -0.88
PTPN7-204	ENST00000462815	TMEM89	A2RUT3	159 aa		9.56	□□□□□ -0.88
PTPN7-204	ENST00000462815		M0R233	179 aa		9.56	□□□□□ -0.88
PTPN7-204	ENST00000462815	OR2T1	O43869	369 aa		9.56	□□□□□ -0.88
PTPN7-204	ENST00000462815	TPST1	O60507	370 aa		9.56	□□□□□ -0.88
PTPN7-204	ENST00000462815	SLC22A3	O75751	556 aa		9.56	□□□□□ -0.88
PTPN7-204	ENST00000462815	MSMB	P08118	114 aa		9.56	□□□□□ -0.88
PTPN7-204	ENST00000462815	GAA	P10253	952 aa		9.56	□□□□□ -0.88

Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms