RNA–Protein interactions for RNA: ENST00000455359.5

HMGXB4-204, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 1,325 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-204ENST00000455359 BEND4Q6ZU67 534 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 SLC35D2Q76EJ3 337 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 NUFIP2Q7Z417 695 aaKnown RBP12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 LRRC75AQ8NAA5 344 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 POMGNT2Q8NAT1 580 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 RELL2Q8NC24 303 aaPredicted RBP12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 OR9Q2Q8NGE9 314 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 OR6X1Q8NH79 312 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF385AQ96PM9 386 aaKnown RBP12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 FEVQ99581 238 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 GPA33Q99795 319 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 TXNIPQ9H3M7 391 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF556Q9HAH1 456 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 MCCC2Q9HCC0 563 aa12.68□□□□□ -0.38
HMGXB4-204ENST00000455359 TRAV27A0A087WT01 109 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF726A6NNF4 738 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 ANKRD65E5RJM6 399 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 SLC43A1O75387 559 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 BCL10O95999 233 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 IGHMP01871 453 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 CD14P08571 375 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 IFNGR1P15260 489 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 CLDN17P56750 224 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 PPP1R8Q12972 351 aaKnown RBP12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 LAPTM4AQ15012 233 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 RFX4Q33E94 735 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 FBXW9Q5XUX1 488 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 GPR139Q6DWJ6 353 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 FAHD1Q6P587 224 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 SMARCD3Q6STE5 483 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 CASP12Q6UXS9 341 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF620Q6ZNG0 422 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF771Q7L3S4 317 aaPredicted RBP12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 ABHD12BQ7Z5M8 362 aaPredicted RBP12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 TMEM179BQ7Z7N9 219 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 LSRQ86X29 649 aaPredicted RBP12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 MOSPD2Q8NHP6 518 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 RNASE6Q93091 150 aaKnown RBP12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 LRR1Q96L50 414 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 USB1Q9BQ65 265 aaKnown RBP12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 LINC00470Q9BZP3 86 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 UCK2Q9BZX2 261 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 GABARAPL1Q9H0R8 117 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 NRIP3Q9NQ35 241 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 IL20Q9NYY1 176 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 MALT1Q9UDY8 824 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 CDH10Q9Y6N8 788 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 TENM4Q6N022 2769 aa12.67□□□□□ -0.38
HMGXB4-204ENST00000455359 USP9YO00507 2555 aaPredicted RBP12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 A6NIZ1 184 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 EEF1E1-BLOC1S5C9J1V9 151 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 C11orf98E9PRG8 122 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 EEF1E1O43324 174 aaKnown RBP12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 IDH3BO43837 385 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 SMNDC1O75940 238 aaKnown RBP eCLIP12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 NR2C1P13056 603 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 HLA-DOBP13765 273 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF23P17027 643 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 SLC6A6P31641 620 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 NTF4P34130 210 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 RPL4P36578 427 aaKnown RBP12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 RAP1BP61224 184 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 RAP1AP62834 184 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 STK11Q15831 433 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 ACKR1Q16570 336 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 HMBOX1Q6NT76 420 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 Q6ZT83 130 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 AMIGO2Q86SJ2 522 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 MEX3DQ86XN8 651 aaKnown RBP12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 PQLC1Q8N2U9 271 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 PARP8Q8N3A8 854 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF610Q8N9Z0 462 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 ATG16L2Q8NAA4 619 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 FANK1Q8TC84 345 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 FNDC8Q8TC99 324 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF775Q96BV0 537 aaPredicted RBP12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 SLC25A44Q96H78 314 aaPredicted RBP12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 PKP2Q99959 881 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 HDHD5Q9BXW7 423 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 OR10A4Q9H209 315 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 SLCO5A1Q9H2Y9 848 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 C12orf49Q9H741 205 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 ENOPH1Q9UHY7 261 aa12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 PHF3Q92576 2039 aaKnown RBP12.66□□□□□ -0.38
HMGXB4-204ENST00000455359 SLC35F4A4IF30 521 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 MCIDASD6RGH6 385 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 IMPA2O14732 288 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 ARPC3O15145 178 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 AHCYL1O43865 530 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 TXNDC12O95881 172 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 F13BP05160 661 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 RPS6KA3P51812 740 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 CTXN1P60606 82 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 RPL27P61353 136 aaKnown RBP12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 ELF3P78545 371 aaPredicted RBP12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 SORDQ00796 357 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 ARMC4Q5T2S8 1044 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 C1QTNF12Q5T7M4 302 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 NIPAL3Q6P499 406 aa12.65□□□□□ -0.38
HMGXB4-204ENST00000455359 ZNF474Q6S9Z5 364 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms