RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 MPP4Q96JB8 637 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 LRR1Q96L50 414 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 HS6ST2Q96MM7 605 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 ZNF583Q96ND8 569 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 KATNB1Q9BVA0 655 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 CACNG6Q9BXT2 260 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 GDF2Q9UK05 429 aaPredicted RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 NOX1Q9Y5S8 564 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 TRAPPC13A5PLN9 417 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 ZNF99A8MXY4 864 aaPredicted RBP10.49□□□□□ -0.73
USP40-210ENST00000454354 LRRN3E7EW58 273 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 PLPP3O14495 311 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 IGKV3-15P01624 115 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 VIMP08670 466 aaKnown RBP10.49□□□□□ -0.73
USP40-210ENST00000454354 PTNP21246 168 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 APOBEC3AP31941 199 aaPredicted RBP10.49□□□□□ -0.73
USP40-210ENST00000454354 UBE2NP61088 152 aaKnown RBP10.49□□□□□ -0.73
USP40-210ENST00000454354 ARF1P84077 181 aaKnown RBP10.49□□□□□ -0.73
USP40-210ENST00000454354 IL1RL1Q01638 556 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 KRTAP1-1Q07627 177 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 PMS2P3Q13401 168 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 CEACAM16Q2WEN9 425 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 MMEL1Q495T6 779 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 ERICH5Q6P6B1 374 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 ZNF627Q7L945 461 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 SNX32Q86XE0 403 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 OR5J2Q8NH18 312 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 VANGL1Q8TAA9 524 aaPredicted RBP10.49□□□□□ -0.73
USP40-210ENST00000454354 SLC26A7Q8TE54 656 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 ZNF837Q96EG3 531 aaPredicted RBP10.49□□□□□ -0.73
USP40-210ENST00000454354 ADAD1Q96M93 576 aaKnown RBP10.49□□□□□ -0.73
USP40-210ENST00000454354 ECSITQ9BQ95 431 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 SLC19A3Q9BZV2 496 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 CRLF2Q9HC73 371 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 MED4Q9NPJ6 270 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 SLC7A7Q9UM01 511 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 MOKQ9UQ07 419 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 ATP23Q9Y6H3 246 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 CAPN7Q9Y6W3 813 aa10.49□□□□□ -0.73
USP40-210ENST00000454354 A0A096LPE4 126 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 A0A1W2PPZ6 126 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 SLC35F4A4IF30 521 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 CECR9P0C854 216 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 ZP4Q12836 540 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 ZNF74Q16587 644 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 HSP90B2PQ58FF3 399 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 PHYHD1Q5SRE7 291 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 TTC33Q6PID6 262 aaPredicted RBP10.48□□□□□ -0.73
USP40-210ENST00000454354 WDFY1Q8IWB7 410 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 CCDC36Q8IYA8 594 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 PCYOX1LQ8NBM8 494 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 C10orf82Q8WW14 230 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 PRSS27Q9BQR3 290 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 REG4Q9BYZ8 158 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 POLR2J2Q9GZM3 115 aaKnown RBP10.48□□□□□ -0.73
USP40-210ENST00000454354 POLR2J3Q9H1A7 115 aaKnown RBP10.48□□□□□ -0.73
USP40-210ENST00000454354 GID8Q9NWU2 228 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 MED29Q9NX70 200 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 BAG5Q9UL15 447 aa10.48□□□□□ -0.73
USP40-210ENST00000454354 ZNF503-AS2A6NEH8 195 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 FAM220BPB1ANY3 271 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 RNF223E7ERA6 249 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 M0R3G1 203 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 PDE5AO76074 875 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 IGF2P01344 180 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 CRYAAP02489 173 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 ADORA3P0DMS8 318 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 CBR1P16152 277 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 CALCRP30988 508 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 NUDT6P53370 316 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 TUBA1BP68363 451 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 TUBA4AP68366 448 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 NAAAQ02083 359 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 CHRNB3Q05901 458 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 SF3A3Q12874 501 aaKnown RBP eCLIP10.47□□□□□ -0.73
USP40-210ENST00000454354 SWI5Q1ZZU3 235 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 TUBA1AQ71U36 451 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 MYPOPQ86VE0 399 aaPredicted RBP10.47□□□□□ -0.73
USP40-210ENST00000454354 CARM1Q86X55 608 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 C10orf53Q8N6V4 93 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 PROX1Q92786 737 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 TXNDC15Q96J42 360 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 KCNS3Q9BQ31 491 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 EMC6Q9BV81 110 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 SEC61A2Q9H9S3 476 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 B3GAT2Q9NPZ5 323 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 NANSQ9NR45 359 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 ZNF229Q9UJW7 825 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 USP22Q9UPT9 525 aa10.47□□□□□ -0.73
USP40-210ENST00000454354 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.47□□□□□ -0.739e-8■■■■■ 29.1
USP40-210ENST00000454354 ATRQ13535 2644 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 MXRA5Q9NR99 2828 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 A0A096LNT2 108 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 LOC100653049A0A140TA62 436 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 SSX4O60224 188 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 KRT34O76011 436 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 OR5F1O95221 314 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 CH25HO95992 272 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 CELA3BP08861 270 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 ASAH2BP0C7U1 165 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms