RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 TRAPPC13A5PLN9 417 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 CPSF4LA6NMK7 179 aaKnown RBP16.89■□□□□ 0.29
USP40-207ENST00000450940 LRRN3E7EW58 273 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 MRASO14807 208 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 IGKV3-15P01624 115 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 NQO1P15559 274 aaKnown RBP16.89■□□□□ 0.29
USP40-207ENST00000450940 UBE2NP61088 152 aaKnown RBP16.89■□□□□ 0.29
USP40-207ENST00000450940 KRTAP1-1Q07627 177 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 PUDPQ08623 228 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 MAPRE2Q15555 327 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 CEACAM16Q2WEN9 425 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 SLC26A7Q8TE54 656 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 MPP4Q96JB8 637 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 ZNF583Q96ND8 569 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 ECSITQ9BQ95 431 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 CRLF2Q9HC73 371 aa16.89■□□□□ 0.29
USP40-207ENST00000450940 A0A096LPE4 126 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 A0A1W2PPZ6 126 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 RNF223E7ERA6 249 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 SLC22A2O15244 555 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 VIMP08670 466 aaKnown RBP16.88■□□□□ 0.29
USP40-207ENST00000450940 CBR1P16152 277 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 GUCY1A3Q02108 690 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 ZP4Q12836 540 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 SWI5Q1ZZU3 235 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 MST1LQ2TV78 715 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 MMEL1Q495T6 779 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 PHYHD1Q5SRE7 291 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 REP15Q6BDI9 236 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 ZNF627Q7L945 461 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 CCDC36Q8IYA8 594 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 OR5J2Q8NH18 312 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 VANGL1Q8TAA9 524 aaPredicted RBP16.88■□□□□ 0.29
USP40-207ENST00000450940 TXNDC15Q96J42 360 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 SLC19A3Q9BZV2 496 aa16.88■□□□□ 0.29
USP40-207ENST00000450940 SLC35F4A4IF30 521 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 ZNF99A8MXY4 864 aaPredicted RBP16.87■□□□□ 0.29
USP40-207ENST00000450940 CRYAAP02489 173 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 CECR9P0C854 216 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 IL1RL1Q01638 556 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 NAAAQ02083 359 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 POU3F1Q03052 451 aaPredicted RBP16.87■□□□□ 0.29
USP40-207ENST00000450940 CHRNB3Q05901 458 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 ZNF74Q16587 644 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 ERICH5Q6P6B1 374 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 TTC33Q6PID6 262 aaPredicted RBP16.87■□□□□ 0.29
USP40-207ENST00000450940 SNX32Q86XE0 403 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 WDFY1Q8IWB7 410 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 C10orf53Q8N6V4 93 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 OR10H5Q8NGA6 315 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 PRSS27Q9BQR3 290 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 EMC6Q9BV81 110 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 MED29Q9NX70 200 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 SLC7A7Q9UM01 511 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 ABCA1O95477 2261 aa16.87■□□□□ 0.29
USP40-207ENST00000450940 YLPM1P49750 1951 aaKnown RBP16.86■□□□□ 0.29
USP40-207ENST00000450940 LOC100653049A0A140TA62 436 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 SSX4O60224 188 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 KRT34O76011 436 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 BMP4P12644 408 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 DSCR9P59020 149 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 TUBA1BP68363 451 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 TUBA4AP68366 448 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 RAB35Q15286 201 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 TUBA1AQ71U36 451 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 PCYOX1LQ8NBM8 494 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 C10orf82Q8WW14 230 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 POLR2J2Q9GZM3 115 aaKnown RBP16.86■□□□□ 0.29
USP40-207ENST00000450940 POLR2J3Q9H1A7 115 aaKnown RBP16.86■□□□□ 0.29
USP40-207ENST00000450940 GID8Q9NWU2 228 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 B3GNT2Q9NY97 397 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 TAS2R5Q9NYW4 299 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 BAG5Q9UL15 447 aa16.86■□□□□ 0.29
USP40-207ENST00000450940 ZNF503-AS2A6NEH8 195 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 M0R3G1 203 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 PDE5AO76074 875 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 ADORA3P0DMS8 318 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 ARR3P36575 388 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 SF3A3Q12874 501 aaKnown RBP eCLIP16.85■□□□□ 0.295e-6■■■■■ 39.5
USP40-207ENST00000450940 OR4F15Q8NGB8 312 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 PROX1Q92786 737 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 KCNS3Q9BQ31 491 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 RHNO1Q9BSD3 238 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 MED4Q9NPJ6 270 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 B3GAT2Q9NPZ5 323 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 NANSQ9NR45 359 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 CA10Q9NS85 328 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 ZNF229Q9UJW7 825 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 USP22Q9UPT9 525 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 SH3GLB1Q9Y371 365 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 CAPN7Q9Y6W3 813 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 PMF1-BGLAPU3KQ54 211 aa16.85■□□□□ 0.29
USP40-207ENST00000450940 A0A096LNT2 108 aa16.84■□□□□ 0.29
USP40-207ENST00000450940 ZNF726A6NNF4 738 aa16.84■□□□□ 0.29
USP40-207ENST00000450940 CH25HO95992 272 aa16.84■□□□□ 0.29
USP40-207ENST00000450940 IGF2P01344 180 aa16.84■□□□□ 0.29
USP40-207ENST00000450940 IFNA14P01570 189 aa16.84■□□□□ 0.29
USP40-207ENST00000450940 ASAH2BP0C7U1 165 aa16.84■□□□□ 0.29
USP40-207ENST00000450940 AHCYP23526 432 aa16.84■□□□□ 0.29
USP40-207ENST00000450940 CALCRP30988 508 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms