RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 NKAIN4Q8IVV8 208 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 TMEM123Q8N131 208 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 DEPDC4Q8N2C3 294 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 TMEM239Q8WW34 195 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 NEUROG1Q92886 237 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 FAM162AQ96A26 154 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 BOD1Q96IK1 185 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 HS6ST2Q96MM7 605 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 LRRC37BQ96QE4 947 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 GPR35Q9HC97 309 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 B3GAT2Q9NPZ5 323 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 CISD1Q9NZ45 108 aaKnown RBP13.31□□□□□ -0.28
LIMS3-201ENST00000437679 ABCD2Q9UBJ2 740 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 LAMP3Q9UQV4 416 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 SLC35F4A4IF30 521 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 SHISA9B4DS77 424 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 RNF13O43567 381 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 SERPINA1P01009 418 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 MT-ND1P03886 318 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 IFNW1P05000 195 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 UGT2B15P54855 530 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 CDH11P55287 796 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 SLC25A3Q00325 362 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 ST3GAL3Q11203 375 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 ZP4Q12836 540 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 IFI44LQ53G44 452 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 ANKRD16Q6P6B7 361 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 FKBP9P1Q75LS8 142 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 CBLL1Q75N03 491 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 NANOGNBQ7Z5D8 188 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 VTCN1Q7Z7D3 282 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 LRRC17Q8N6Y2 441 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 MAGEE2Q8TD90 523 aaPredicted RBP13.3□□□□□ -0.28
LIMS3-201ENST00000437679 SMAP2Q8WU79 429 aaPredicted RBP13.3□□□□□ -0.28
LIMS3-201ENST00000437679 TMEM255BQ8WV15 326 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 GEMIN6Q8WXD5 167 aaKnown RBP13.3□□□□□ -0.28
LIMS3-201ENST00000437679 BCL2L2Q92843 193 aaPredicted RBP13.3□□□□□ -0.28
LIMS3-201ENST00000437679 SGTBQ96EQ0 304 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 PERPQ96FX8 193 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 TXNDC15Q96J42 360 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 LRR1Q96L50 414 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 PRRC1Q96M27 445 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 EMC6Q9BV81 110 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 CRLF2Q9HC73 371 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 MEPEQ9NQ76 525 aaPredicted RBP13.3□□□□□ -0.28
LIMS3-201ENST00000437679 MED29Q9NX70 200 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 ADA2Q9NZK5 511 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 POU2F3Q9UKI9 436 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 MED31Q9Y3C7 131 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 ACANP16112 2415 aa13.3□□□□□ -0.28
LIMS3-201ENST00000437679 A0A096LPE4 126 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 A0A1W2PPZ6 126 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 M0R3G1 203 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 GMNNO75496 209 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 IGF2P01344 180 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 ASAH2BP0C7U1 165 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 HOXB1P14653 301 aaPredicted RBP13.29□□□□□ -0.28
LIMS3-201ENST00000437679 IFNGR1P15260 489 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 FUT1P19526 365 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 PTH2RP49190 550 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 RPS4XP62701 263 aaKnown RBP13.29□□□□□ -0.28
LIMS3-201ENST00000437679 ARF1P84077 181 aaKnown RBP13.29□□□□□ -0.28
LIMS3-201ENST00000437679 CAMK2DQ13557 499 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 CEACAM16Q2WEN9 425 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 SLC46A3Q7Z3Q1 461 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 C20orf196Q8IYI0 205 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 WFDC11Q8NEX6 87 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 OR6N1Q8NGY5 312 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 PFN4Q8NHR9 129 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 IGFBPL1Q8WX77 278 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 ADAD1Q96M93 576 aaKnown RBP13.29□□□□□ -0.28
LIMS3-201ENST00000437679 TMUB1Q9BVT8 246 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 GSX2Q9BZM3 304 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 MOV10Q9HCE1 1003 aaKnown RBP13.29□□□□□ -0.28
LIMS3-201ENST00000437679 FAIMQ9NVQ4 179 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 TAS2R5Q9NYW4 299 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 TAGLN3Q9UI15 199 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 RPS6KA6Q9UK32 745 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 A4GNTQ9UNA3 340 aa13.29□□□□□ -0.28
LIMS3-201ENST00000437679 FLNAP21333 2647 aaKnown RBP13.28□□□□□ -0.28
LIMS3-201ENST00000437679 MTORP42345 2549 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 ARPC4-TTLL3A0A0A6YYG9 625 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 BLOC1S5-TXNDC5H3BN57 136 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 OR7A10O76100 309 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 NCK1P16333 377 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 YAP1P46937 504 aaKnown RBP13.28□□□□□ -0.28
LIMS3-201ENST00000437679 CSNK1A1P48729 337 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 BIDP55957 195 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 SPOCK1Q08629 439 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 Q5PR19 223 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 PHYHD1Q5SRE7 291 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 PRSS57Q6UWY2 283 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 NHLRC1Q6VVB1 395 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 SLC35D2Q76EJ3 337 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 GTPBP3Q969Y2 492 aaKnown RBP13.28□□□□□ -0.28
LIMS3-201ENST00000437679 HSH2DQ96JZ2 352 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 CCT8L2Q96SF2 557 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 FNDC11Q9BVV2 318 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 EGFL7Q9UHF1 273 aa13.28□□□□□ -0.28
LIMS3-201ENST00000437679 POFUT2Q9Y2G5 429 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms