RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RNF4P78317 190 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 CADM3Q8N126 398 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ATG101Q9BSB4 218 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 PPP1R14DQ9NXH3 145 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 LSM5Q9Y4Y9 91 aaKnown RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 OR5H14A6NHG9 310 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ZNF791Q3KP31 576 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 C15orf39Q6ZRI6 1047 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SUCNR1Q9BXA5 334 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 B3GALT5Q9Y2C3 310 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 C5P01031 1676 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 KIR2DS5A0A0G2JLQ3 304 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 A0A0G2JNG1 304 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 KIR2DS3K7RE56 304 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SOCS7O14512 581 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 KIR2DS5Q14953 304 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 Q6ZRG5 221 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 DND1Q8IYX4 353 aaKnown RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 INIPQ9NRY2 104 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 TMEM184BQ9Y519 407 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 COL14A1Q05707 1796 aaKnown RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 SLC22A20A6NK97 555 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 MCRIP1C9JLW8 97 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 H3BQ06 376 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 PIRO00625 290 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 CST3P01034 146 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 CSN1S1P47710 185 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 PJVKQ0ZLH3 352 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 RNLSQ5VYX0 342 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ZNRF4Q8WWF5 429 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 KCNK15Q9H427 330 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ACHEP22303 614 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SOX2P48431 317 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 EVX1P49640 407 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 NPY4RP50391 375 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 WNT7BP56706 349 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 FOXO1Q12778 655 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 IL10RAQ13651 578 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 LGALSLQ3ZCW2 172 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 OR5AK3PQ8NH89 298 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 DEFB126Q9BYW3 111 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ANKRD30BLA7E2S9 258 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 CST4P01036 141 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ADH5P11766 374 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 ZNF44P15621 663 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 FOXK1P85037 733 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 PEBP4Q96S96 227 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SEC11CQ9BY50 192 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 EHFQ9NZC4 300 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 EXOGQ9Y2C4 368 aaKnown RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 RREB1Q92766 1687 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SCN1AP35498 2009 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 SERPINE3A8MV23 424 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 YY2O15391 372 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 CH25HO95992 272 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 GNB3P16520 340 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 C2orf76Q3KRA6 126 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 PSRC1Q6PGN9 363 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 LYPD4Q6UWN0 246 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 VITQ6UXI7 678 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 PSMF1Q92530 271 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 COL25A1Q9BXS0 654 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 C11orf54Q9H0W9 315 aaPredicted RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 TREX1Q9NSU2 369 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 KCMF1Q9P0J7 381 aa6.69□□□□□ -1.34
VPS53-204ENST00000437048 PURGQ9UJV8 347 aaKnown RBP6.69□□□□□ -1.34
VPS53-204ENST00000437048 AP4M1O00189 453 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CLIC3O95833 236 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 ACKR3P25106 362 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 UBE2NP61088 152 aaKnown RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 GPR18Q14330 331 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SDR9C7Q8NEX9 313 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 LMO3Q8TAP4 145 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SLC35B3Q9H1N7 401 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 IAH1Q2TAA2 248 aaPredicted RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 CSNK1A1LQ8N752 337 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 KIAA1958Q8N8K9 716 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SLAIN1Q8ND83 568 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 APH1AQ96BI3 265 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 ZC3HAV1LQ96H79 300 aaKnown RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 BCL6P41182 706 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 DGKEP52429 567 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 ARL16Q0P5N6 197 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 OR14C36Q8NHC7 312 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 MRGPRX2Q96LB1 330 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 APOBEC3GQ9HC16 384 aaKnown RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 ZNF814B7Z6K7 855 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 STBD1O95210 358 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CTSLP07711 333 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 ZNF345Q14585 488 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 OR52D1Q9H346 318 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CLDN34H7C241 214 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SMAD9O15198 467 aaKnown RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 B4GAT1O43505 415 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 NKX2-5P52952 324 aaPredicted RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 KRTDAPP60985 99 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 MAML2Q8IZL2 1156 aaPredicted RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 PDGFDQ9GZP0 370 aaPredicted RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 SH3BP2P78314 561 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 NOGQ13253 232 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms