RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SMIM6P0DI80 62 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 SCAND1P57086 179 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 BLOC1S1P78537 153 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 HTRA4P83105 476 aaPredicted RBP9.77□□□□□ -0.84
USP54-204ENST00000422491 SRSF3P84103 164 aaKnown RBP9.77□□□□□ -0.84
USP54-204ENST00000422491 PON3Q15166 354 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 IRF4Q15306 451 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 Q499Y3 187 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 NKAIN2Q5VXU1 208 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 C3orf33Q6P1S2 294 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 OR6S1Q8NH40 331 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 CCDC107Q8WV48 283 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 DVL3Q92997 716 aaPredicted RBP9.77□□□□□ -0.84
USP54-204ENST00000422491 SLITRK2Q9H156 845 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 TM7SF3Q9NS93 570 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 SLC22A11Q9NSA0 550 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 GOLGA4Q13439 2230 aaKnown RBP9.77□□□□□ -0.85
USP54-204ENST00000422491 NPIPA5A0A0B4J1W7 369 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 TMEM82A0PJX8 343 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 NPIPA7E9PJI5 369 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 IMPA2O14732 288 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 SGCEO43556 437 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 NPIPA8P0DM63 369 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 C6P13671 934 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 SELPP16109 830 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 PTGFRP43088 359 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 GPR143P51810 404 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 EFNB2P52799 333 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 PNLIPRP2P54317 469 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 DPTQ07507 201 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 TSC22D1Q15714 1073 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 LIPNQ5VXI9 398 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 STEAP1BQ6NZ63 245 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 TMEM71Q6P5X7 295 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 ZNF600Q6ZNG1 722 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 ACOT7LQ6ZUV0 252 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 FAM122BQ7Z309 247 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 SLC43A2Q8N370 569 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 GRHL3Q8TE85 626 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 PXYLP1Q8TE99 480 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 HSPA12BQ96MM6 686 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 CRB3Q9BUF7 120 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 PDCD10Q9BUL8 212 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 ZNF426Q9BUY5 554 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 TRPV4Q9HBA0 871 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 FBXO34Q9NWN3 711 aa9.77□□□□□ -0.85
USP54-204ENST00000422491 TRAV8-7A0A075B6U6 113 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 TRBV5-5A0A0J9YX44 114 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 GXYLT2A0PJZ3 443 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 TMEM200CA6NKL6 621 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 SULT2B1O00204 365 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 DLSTP36957 453 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 CASRP41180 1078 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 NTHL1P78549 312 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 VWA2Q5GFL6 755 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 METRNLQ641Q3 311 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 SLC6A19Q695T7 634 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 LPCAT3Q6P1A2 487 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 ENPP7Q6UWV6 458 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 OR4K14Q8NGD5 310 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 OR8S1Q8NH09 359 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 FGF13Q92913 245 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 MRPL48Q96GC5 212 aaKnown RBP9.76□□□□□ -0.85
USP54-204ENST00000422491 ZNF251Q9BRH9 671 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 PTDSS2Q9BVG9 487 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 MYOZ1Q9NP98 299 aaPredicted RBP9.76□□□□□ -0.85
USP54-204ENST00000422491 STEAP1Q9UHE8 339 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 A0A0B4J2E0 115 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 A0A1B0GX12 115 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 TGM5O43548 720 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 AK4P27144 223 aaPredicted RBP9.76□□□□□ -0.85
USP54-204ENST00000422491 SOX2P48431 317 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 PDZK1IP1Q13113 114 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 LRRC37A5PQ49AS3 106 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 RAB12Q6IQ22 244 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 SLC16A13Q7RTY0 426 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 NRROSQ86YC3 692 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 SKA3Q8IX90 412 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 NPEPL1Q8NDH3 523 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 ZPLD1Q8TCW7 415 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 IRF7Q92985 503 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 COL26A1Q96A83 441 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 Q96M85 177 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 ZNF559Q9BR84 538 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 GPR174Q9BXC1 333 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 FLRT3Q9NZU0 649 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 APOBEC3BQ9UH17 382 aaKnown RBP9.76□□□□□ -0.85
USP54-204ENST00000422491 IER3IP1Q9Y5U9 82 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 TICRRQ7Z2Z1 1910 aa9.76□□□□□ -0.85
USP54-204ENST00000422491 MCIDASD6RGH6 385 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 WNT11O96014 354 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 CD79AP11912 226 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 SPI1P17947 270 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 GRPRP30550 384 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 FLT3LGP49771 235 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 NR0B2Q15466 257 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 PLEKHN1Q494U1 663 aaPredicted RBP9.75□□□□□ -0.85
USP54-204ENST00000422491 DCST2Q5T1A1 773 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 TMED4Q7Z7H5 227 aa9.75□□□□□ -0.85
USP54-204ENST00000422491 ZNF227Q86WZ6 799 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms