RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TRILQ7L0X0 811 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 PXKQ7Z7A4 578 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 RBMXL3Q8N7X1 1067 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 TSPAN14Q8NG11 270 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 OR10D3Q8NH80 312 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 CPNE4Q96A23 557 aaPredicted RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ZNF582Q96NG8 517 aaPredicted RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 OXGR1Q96P68 337 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 TSPAN32Q96QS1 320 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 TSPAN10Q9H1Z9 355 aaPredicted RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ZNF346Q9UL40 294 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 SNX5Q9Y5X3 404 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 LIPGQ9Y5X9 500 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ITPR1Q14643 2758 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 A0A087WXM4 84 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 IRGMA1A4Y4 181 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 EFCAB10A6NFE3 127 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 FAM183AA6NL82 134 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 KDM4EB2RXH2 506 aaPredicted RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 NPIPA2E9PIF3 369 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 NPIPA3F8WFD2 350 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 MS4A18H0YCH9 400 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 TXNDC12O95881 172 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 IGHMP01871 453 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ZNF43P17038 809 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 LHX2P50458 406 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 SLC16A1P53985 500 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ITGADQ13349 1161 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 MS4A18Q3C1V0 323 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 KLHL12Q53G59 568 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 RNFT1Q5M7Z0 435 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 NXNL2Q5VZ03 156 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 TMEM154Q6P9G4 183 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 SLC35D2Q76EJ3 337 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ADCK1Q86TW2 530 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 KDM8Q8N371 416 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 STX19Q8N4C7 294 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 CYB561A3Q8NBI2 242 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 SLC37A3Q8NCC5 494 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 MYDGFQ969H8 173 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 MRPS26Q9BYN8 205 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 CCDC90BQ9GZT6 254 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 VCX3AQ9NNX9 186 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 HINT3Q9NQE9 182 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 PLCXD1Q9NUJ7 323 aa15.34■□□□□ 0.05
CCDC28B-202ENST00000421922 ZNF407Q9C0G0 2248 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 IGHV3-15A0A0B4J1V0 119 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 H0YC42 278 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 K7EM74 188 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 ARHGEF9O43307 516 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 AKAP8O43823 692 aaKnown RBP15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 FAM87AP0C7U9 286 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 IFNGR1P15260 489 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 ATP6V1B1P15313 513 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF708P17019 499 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 SUCLG1P53597 346 aaKnown RBP15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 CLDN15P56746 228 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 MELKQ14680 651 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 LCN1P1Q5VSP4 162 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 RPUSD3Q6P087 351 aaKnown RBP15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 FAM180AQ6UWF9 173 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 AHSA2Q719I0 299 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 FAM122BQ7Z309 247 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 ARIH2OSQ8N7S6 290 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 NMNAT3Q96T66 252 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 COPS4Q9BT78 406 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 SRXN1Q9BYN0 137 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 PRRG4Q9BZD6 226 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 OR51V1Q9H2C8 321 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 AMBNQ9NP70 447 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF71Q9NQZ8 489 aaPredicted RBP15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 TUBD1Q9UJT1 453 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 MCTS1Q9ULC4 181 aaKnown RBP15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 CAMK2AQ9UQM7 478 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 DNAJC13O75165 2243 aa15.33■□□□□ 0.04
CCDC28B-202ENST00000421922 CELSR3Q9NYQ7 3312 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 NPIPB13A6NJU9 1138 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 SLC22A31A6NKX4 558 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 CLCA1A8K7I4 914 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 NPIPB4C9JG80 1138 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 RGS10O43665 173 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 IGHG3P01860 377 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 ATP6V1E1P36543 226 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 AGFG1P52594 562 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 CLDN18P56856 261 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 EFNB1P98172 346 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF91Q05481 1191 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF239Q16600 458 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 EEF1A1P5Q5VTE0 462 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 VASNQ6EMK4 673 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 LAIR2Q6ISS4 152 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 NIPAL3Q6P499 406 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 BCDIN3DQ7Z5W3 292 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 GHDCQ8N2G8 530 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 PNPLA2Q96AD5 504 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 ADGRG7Q96K78 797 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 MED20Q9H944 212 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 FANCFQ9NPI8 374 aa15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 CNOT2Q9NZN8 540 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-202ENST00000421922 KLHL13Q9P2N7 655 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms